Scomber scombrus (Atlantic mackerel): 133990866
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Entry
133990866 CDS
T10651
Name
(RefSeq) protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133990866
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133990866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
RibLong
TMEM154
Motif
Other DBs
NCBI-GeneID:
133990866
NCBI-ProteinID:
XP_062285262
LinkDB
All DBs
Position
11:8230087..8233355
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AA seq
1011 aa
AA seq
DB search
MGETGWNGLLLLMCVSLANLAAVTYAKTVKYQTFEEDAPGTVIGNLAKDISSTPSSSGGS
RTNFRMMKQFNSSFIRLRESDGQLTIGERIDRERICKHTLHCLIAFDVVSFSKEQFKLIH
VEVEVKDINDNSPEFPRKESSLEISENTAVGTRIPLDFAVDEDVGVNYIQSYQISVNSHF
SIDVLSRADGVKYAELVLMKELDRETQASYALELVAMDGGNPSRTGTTRINVKVKDYNDN
SPVFDRNSFSVDLPEDAPIGSLLLDLNAEDPDEGLNGEVVYGFGNQVPSEIRQLFRVDRK
TGRLTLESPIDFESKNTYEFDVQATDLGPNPSPAICKIVVQVQDVNDNAPEISITPMTSI
TAGIAYITEAAARESFVALVSTSDRDSGANGQVHCTLYGHDHFRLQQAYEDSFMIVSTNP
LDREKIPEYNLTVVAEDLGSPPFRTITQYTIRLTDENDNAPVFSKPVYEVAVVENNAPGA
YVTTVVARDMDMGSNGKVSYKLADTYFMGSPISTFMSLDPASGSLYALRSFNYEVMKQLE
LRITASDSGSPPLSGSANVFVRIVDQNDNAPAITHPALNNGSAEVLLPRDAPTGYVITRV
EARDADEGVNSELSFGLATGEPSVFSVNKATGEIYLNQVLSHDVDETLSVTVTVSDNGRP
ALTSTATLHFLIIAGSPPSDRTVYQSGVGDEVHAQWDLSVVIIVVLAGSCTLLLLAIILI
ATTCNRRKRDKSGEDSDSYGEKGTLERGRSHVVDNPLLPLHGAGGEAGFEGHSYSSQPGG
FNSAHPGGIDMCSASEDGSEVPCVYDSDSNSKPRGNKLEGYSTLPGYGNGKEAVRPITIW
KGNSYTTISARDPAFSGKDSGKGDSDFNDSDSDVSGDTGLKKDGAVVPPMGGQNALWACT
SECKVLGHSDRCWSPSAVRANAAPSPAPTLSSFSSLSKTASLPRDPHRRDNYYQAQIPKT
TGLQSVYEKVLHREYDYVLVTPPRPVRVQEISDITIPVYTPTPTHCPTNDI
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacagggtggaacgggttgttgttgctaatgtgcgtctctttggcgaacctg
gctgctgtcacatatgcaaagacggtgaaatatcagacatttgaggaagacgcaccagga
acagtgatcggaaacttggccaaggacatctcatccactccctcttcatcggggggctcc
cggaccaatttcaggatgatgaaacagttcaactcctctttcatccgtctgagggagagc
gacggacagctgaccataggagaaaggatagacagggagcgcatctgcaaacacaccctg
cactgcctcatcgctttcgacgtggtcagcttctccaaagagcagtttaaactcatccac
gtcgaggtggaggtcaaggacatcaacgacaactcccccgagttcccccggaaagagtcg
agtctggagatctccgagaacacagcggtgggcacgcggatcccgctggactttgccgtg
gatgaggatgttggggtgaactacatccaaagctaccagatctccgtaaacagccacttt
tcaatcgacgtgctcagcagggccgacggggttaaatatgcggagctggtgctcatgaag
gagctggaccgggagacgcaggcttcttacgcgctggagctggtcgctatggacggtggc
aacccgtcccgcaccggaacaacgcgcatcaacgtcaaggtgaaagactacaacgacaac
agtccggtgttcgacaggaacagcttctccgtggacttgcccgaggacgcaccgataggc
tccctcttgctggacctgaacgcagaggatccggacgagggactgaacggagaggtggtg
tacgggttcggtaaccaggtgccctcagaaatccggcaactcttcagagtggatagaaag
accggacggctcacactggagagcccgattgactttgaaagtaagaacacgtacgagttt
gacgtccaggccacagacctgggtccgaacccgagcccggccatatgcaaaattgtagtg
caggtgcaggacgttaacgataacgcaccggagatctccatcacccccatgacgtccatc
acggcggggatagcgtacatcaccgaggctgcagccagagagagtttcgtggctctggtc
agcacctcggacagagactccggcgctaacggacaggtgcactgcacgctctacggacac
gatcacttcagactgcagcaggcgtacgaggacagctttatgattgtgagtaccaacccg
ttagaccgggagaaaatccctgaatataacctcacagtggtggctgaagatctgggctcc
cctcccttcaggaccatcactcagtacaccatccggctgacggacgagaacgacaacgcg
ccggtgttcagtaagccagtgtatgaggtggctgtggtggagaacaatgcacctggcgca
tacgtcaccacggtcgtggcgcgggacatggacatggggtcaaacgggaaggtcagctac
aaactagcggacacctacttcatgggctcccctatttccaccttcatgtcactggaccca
gccagcggttcgctttacgcgctccggagcttcaactatgaggtgatgaaacagctggag
ctccgaatcacggccagcgacagcggctcccctcctctgtccggcagcgcaaatgtgttt
gtgaggatagtggaccagaatgataacgcaccggccatcactcatcccgcgctcaataac
ggctccgctgaagtcctcctgccccgggacgcaccgaccggctacgtcataacccgggtg
gaggcacgggatgcagacgaaggtgtgaactcagagttgtcctttgggctggccaccggt
gaaccctccgtgttctctgttaacaaagccaccggggagatctacctcaaccaggtgctc
agccacgacgtggacgaaaccctgagcgtgaccgttacagtgagcgacaacgggaggccc
gcgctcacctccaccgccaccctccacttcctcatcatcgcgggctccccgccgagcgac
aggacagtgtaccagtcaggcgtcggagacgaggtacacgcgcagtgggacctgtcggtg
gtgattatcgttgtcctcgcggggagctgcacgctcctgctgctcgccatcatcctcatc
gccaccacctgcaaccggcgcaaacgggacaaaagcggagaagacagtgactcatacgga
gagaagggcacgctggagcggggcaggagccacgtggtggacaacccgcttctgcctctc
cacggggccgggggagaagcaggctttgagggacactcctacagcagccagcccggtggg
ttcaactcagctcaccctgggggcatcgacatgtgctcggcctcagaggatggcagcgag
gtgccctgcgtgtatgactcagacagcaacagcaagcccagagggaataaactcgagggc
tactccactctgcctggctatgggaacggtaaagaggctgtgaggcccatcaccatatgg
aagggcaactcatacaccaccatctctgccagggacccggccttcagtggcaaagacagt
ggcaagggggacagtgacttcaatgacagtgacagtgatgtgagtggagacactggtctg
aagaaagatggagcagtggttcctcccatgggcggccaaaatgctctgtgggcttgcacc
agtgagtgtaaagtcttgggtcactcagatcgctgctggagcccttcagcagtaagagcc
aacgcagcaccctccccagccccgaccctctcctccttcagcagcctatccaagacggca
tccctgcctcgggacccccatcgcagggacaactactaccaggcccaaatccccaaaacg
acagggctgcagagcgtgtacgagaaggtgctgcacagagagtatgactacgtcctggtc
acccctcccaggcctgtgagggtccaggagatcagtgacataaccatccctgtttacacg
cccaccccgacacactgtcccaccaatgacatttaa
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