Scomber scombrus (Atlantic mackerel): 133991067
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Entry
133991067 CDS
T10651
Name
(RefSeq) vimentin A2-like
KO
K07606
vimentin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133991067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133991067
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133991067
04147 Exosome [BR:
ssco04147
]
133991067
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
133991067
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
133991067
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133991067
Exosomal proteins of other cancer cells
133991067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
Myosin_tail_1
DUF7491
TolA_bind_tri
DUF1664
Laminin_II
DUF948
Motif
Other DBs
NCBI-GeneID:
133991067
NCBI-ProteinID:
XP_062285512
LinkDB
All DBs
Position
11:20408150..20413875
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AA seq
455 aa
AA seq
DB search
MSYRSAPHSSYKKMFGGERNAVRSSYSSRQYSIPVRSSRVSFGLSSAPTIYASKTQRLRS
SSAMPRLASENLDFSLSDAINTEFITNRTNEKAQMQSLNDRFASYIDKVRFLEQQNKILL
AELEQLRGKGTSRVGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIDRLREKLQDE
LSQREEAEANMQSFRQDVDNAALARLDLERKVESLQDEINFLKKLHDEEMLELQSQIQQQ
QHVQVDMEMAKPDLTAALRDVRLQYENLASKNIHESEEWYKSKFADLTEAAARNNDALRV
AKQEANDYRRQVQALTCEVDALKGTNESLERQMREIEDNFSLETGGYQDTVGRLEEDIHN
MKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISTPLPNFSSLNLRETMIDSK
PHFETTTTKKVLIKTIETRDGQVINESTQNHDDME
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaggtcagctccacattcttcatacaaaaagatgtttggaggggagagaaac
gcggttaggagcagctactccagccgccaatactccatcccggtgcgttcctcccgggta
tcgttcgggctctcctcagccccgaccatctacgcatcgaagacccagaggctccggagc
agctcggccatgccccggctggcctccgagaacttggacttctccttgtccgacgccata
aacaccgagttcataacgaaccgcaccaacgagaaagcgcagatgcagtctctcaatgat
cgcttcgccagctacatagataaagtccgcttcttggagcagcagaacaagatcctgctg
gcggagctggagcagctgcggggcaaaggcacgtcccgcgtcggagatctgtacgaggac
gagatgcgggagctgagacgtcaggtggaccaactcaccaacgagaaggcccgggtggaa
gttcaccgggacaacctggcagacgacatcgacaggctgagagagaagttgcaggatgag
ctatcccagcgggaggaggctgaggcaaacatgcagagcttcagacaggatgtggacaat
gctgccctcgccagactggacttggagcggaaggtggagtccctgcaggatgaaataaac
ttcctcaagaagctgcatgatgaggaaatgctggaactgcagagccagatccagcagcaa
cagcatgtacaggtagacatggaaatggctaaacccgacctgacagcggctttgagggat
gtgcgtctgcagtatgagaacctggcctccaaaaatatccatgagtctgaggaatggtac
aaatccaagtttgctgacctcaccgaagctgcagcccggaataatgatgctttgagggtg
gctaagcaggaggctaatgactatagacgtcaagttcaggcactgacctgtgaggtggat
gctctcaaaggaactaatgagtccttggagcgccagatgagagagatagaggataacttc
tccctggagacgggcggttaccaggacaccgtcggtcgtctggaagaggacattcacaac
atgaaggatgagatggcccgtcacctccgggagtaccaagacctcctaaatgtcaagatg
gccctggacattgagattgccacctacaggaagctgctggaaggagaggagagcagaatc
tccaccccactgccaaacttctcatctctaaacctgagagaaacgatgattgactccaaa
cctcattttgaaaccacaacaaccaagaaggtcctcatcaagaccattgagactagggat
ggtcaggtgatcaacgagtcaacccagaaccacgacgacatggagtga
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