Scomber scombrus (Atlantic mackerel): 133991080
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Entry
133991080 CDS
T10651
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133991080
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssco02000
]
133991080
Transporters [BR:
ssco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
133991080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
133991080
NCBI-ProteinID:
XP_062285526
LinkDB
All DBs
Position
11:complement(26526771..26565316)
Genome browser
AA seq
2325 aa
AA seq
DB search
MKTSSQIRLLLWKNWTLRKRQKIRFLIEIFWPVLLFIGLVWLRKANPLYQQHECHFPNKA
MPSTGILPWIQGIFCNANNPCFRYPTRGESPGVVSNYNNSVLAKFYADAQELLLNDQEVQ
QFGRLWNQMSSFSNFMETLRNRPSSVLGRGLKINDILKDDEVLTAFLLRDAGLSNSIVYE
LVNAEIRLEQFAFGIPDLQLKDIACSQALLERFIIFPTRMGLHGVRNAMCALSQQRLQKI
EDILYANLDFFKIFKLMPQVLDRSSEGIDLHFWGQVLKATSEKIQVLMEREGSRELLKAV
TSLFSAEGPSSFTKLMSSVSSLFCGYPEGGGSRVLSFNWYEDNNYKVFLGVNGTKSYNYV
YDDTTTPFCNSLMQTLESNPVTKIVWNSVKPLLMGKILYTPDSPAVRKILKSANTTFEEL
ERLRNMAKAWEEMGPQLWAFFHNSVQMNMIRDTLRNPTVTHFMDETLEDTNFTTKDIINF
LHNGQDEEREVGMANFDWRNIFNITDDLIRMFNQYGECISLDKFMAFSDESQMIHQALHL
LEENKFWAGVVFMDMYPWTTSVPPHVKYKIRMDIDAVERTNKIKDRYWDPGPRADPMEDQ
RYIWGGFAYLQDMIEHGIIKLHTGNDWPLGVYVQQMPYPCYVDDLFMITLNRCFPIFMVL
AWIYSVSMTVKSIVLEKELRLKETLKAMGVDNGVIWYTWFIDSFIIMTVSTALLTSIVMG
GKVLNYSNPLLVFFFLLTFTITTIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHILCFA
WQDRITNNMKLAASFLSPVAFGFGTEYLSRYEEQGLGLQWDNIRTSPLEKDSYSFLTSVL
MMVIDAVLYGILAWYLDNVFPGQYGVGRPFYFPFQSSYWQSAAPPHTEMADQDPENPEPD
NMEKDIDSRGTPETYTCNGTGDRKVCKHQSKRDRIEREKELLRRQEETPNQEEEEGQDSG
KEGQLFFESDPVGLVLGVQIEDLVKVFDGCSRPAVNCLNINFYEGQITSFLGHNGAGKTT
TMSILTGLYPPTSGTAYINGRDIRTDIDIIRTSMGMCPQYNILFNHLTVEEHILFYSLLK
GRSQAEAEREVEDMLVDLGLPHKRDDEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSG
VDPYSRRSIWDLLLKYRAGRTVILSTHHMDEADLLSDRIAIISKGQLHCCGSPLFLKNCF
GVGFYLTLVRRMKDHKKRENDCDCASDCSCACSICTGYKDQSQNQSQHLDRVLDGDIDSI
TTLIHHHVPEAKLIEMIGQELTYLLPNKGFKHRAYASLFRELEETLADMGLSSFGISDTS
LEEIFIKVTADGEAANNATTPEQWMLLQRNNGTNIGADGKEEYNGMAQSNGMTHGASDSS
AGRGSQQVKGTTLTLKQFHALLMKRFHHATRSQKDFLAQIVLPASFVLIALIFTMVVPPF
GEYPSLTLSPWMYGPQFTFFSNEQPFDPTMKRFTERVLNPPGLGTRCMEGEPLGMSCRNY
TSEWELPDVSPLVSNILQSPAWNQRNPSPSCQCSTTKKLTMMPICPIGAGGLPPRQRTEA
TGDTMMDLTERNISDYLVKTYPTLIRAGLKSKYWVNEQRYGGLSVGGQLPILDVSPKDIQ
DVFHQLGRMLNITAGYYSRLALQEIGPFLRYMESEFNIKVWYNNKGWHAMVAFMNVANNA
ILRAFLPPTAKPVEFGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASF
VLYLIQERVTKAKHLQFVSGVSPLVYWVANFFWDMMNYSISTAMVVGIFMAFDKKCYTSP
SNLPALIALLLLYGWAVTPMMYPMSYIFSIPSTAYVSLSCINLFIGINSSAITFILELFE
NNRSLLTFNEWLKKGLLIFPHFCLGRGLIDMAMNQAVTDVYARFGEEYTADPFRWDFLGK
NIAFMAVEGFVYFLLNLLIQYRFFLDHWLSDSKKTRVKDEDDDVAAERQRIYEGGSKSDI
LMIRDLSKMYGGRKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGEAT
VAGYSILSEILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPESEIPRVAEWGIQK
LGLTEYADRCAGTYSGGNKRKLSTAIAMIGCPAVVLLDEPTTGMDPHSRRFLWNAIMSVI
QDGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKIKADKPG
LSPELEPVESFMESCFPGCVQREKHYNTLQYEITTSSSLARIFQLVVANKERLSIEDYSV
SQTTLDQVFVNFAKQQTGEDEDVTLQRRTAGGRKVIKISPVKRKT
NT seq
6978 nt
NT seq
+upstream
nt +downstream
nt
atgaagacaagctcccaaatccgccttttactgtggaaaaactggactctccgcaagagg
cagaagattcgcttcctgattgagatcttctggccagtcttgttattcattggtctggtg
tggctaaggaaggccaatccactgtaccaacaacatgagtgtcatttcccaaacaaggcg
atgccctccacggggatcttaccctggatccagggcatcttctgcaatgccaacaacccc
tgcttcagatatccaaccagaggagagtctccaggagtcgtctccaactataataattct
gtattggcaaagttttacgccgatgcccaggagctcctgctcaacgaccaggaggtccag
cagttcggccgtctctggaatcaaatgtcgtccttctcaaacttcatggaaacattgcgc
aacaggccgtcttcagtgttaggtcgtgggctgaagataaatgacattttgaaggatgat
gaagttctcacagctttcctgttgcgagacgccggcctgtctaactctatagtttacgag
ctcgtcaacgcagagatacgactagaacagtttgccttcggcatcccagacctgcagttg
aaagacatagcctgcagccaggccctgctggagcgcttcatcatcttccccactcgcatg
ggcctccatggggtgcgcaacgccatgtgtgccctcagtcaacaaaggctgcagaagata
gaggatatcctgtatgctaatctggacttcttcaaaatcttcaaactgatgcctcaggtc
ttggacaggagctccgaagggattgacctacacttctggggtcaggttcttaaagcgacg
tcggagaagatccaagttctgatggagcgggagggctctcgggagctcctgaaggctgtc
acctctctgttcagtgctgaaggtccgtcctccttcaccaagctgatgtccagcgtgtcc
agcctcttctgtggatacccagagggaggcggctccagggtgctgtccttcaactggtat
gaggacaacaactacaaggtgtttctaggggtgaatggcaccaagagctacaactatgtc
tatgatgacaccaccactcctttctgcaactccctgatgcagaccctggagtccaacccc
gtcacaaaaatcgtgtggaattcagtcaaacccctgctgatgggaaagatcttgtacacc
cccgactcccccgccgtccgcaagatattaaagagtgccaacacaacatttgaggagtta
gagaggctgaggaacatggccaaggcgtgggaggagatgggacctcagctctgggctttc
ttccataacagtgtccagatgaacatgatcagggacaccttaagaaacccgacagtgacg
cacttcatggacgaaactctggaggacacaaattttaccaccaaagacattattaacttc
ttgcacaatggtcaagacgaagagagggaggtgggcatggccaactttgactggaggaac
atttttaacatcactgacgatctcatacgcatgttcaaccagtatggagagtgcatcagc
ctggataagtttatggccttcagtgatgaatcccagatgatccaccaggccttgcatcta
ctagaggagaacaagttttgggctggcgtggtcttcatggacatgtatccctggaccaca
agtgtcccaccacatgtcaagtataagatccgcatggacattgacgcggtggagcgcacc
aacaagatcaaagacaggtactgggaccccggccccagagcagaccccatggaggatcag
aggtacatctggggaggttttgcctacctgcaggacatgattgaacatggcatcatcaag
cttcacacaggcaacgactggccacttggggtctacgttcagcagatgccctatccatgc
tatgtggatgacctcttcatgatcacactgaaccgctgcttcccgatattcatggtgttg
gcttggatctactctgtgtccatgactgtgaaaagcatcgtgctggagaaagagctgcgt
ctcaaggagactctcaaagcaatgggggttgacaacggagtcatttggtacacctggttc
attgacagtttcatcatcatgactgtaagcacggcgctgctcacctccatcgtcatgggt
ggaaaagtgctgaattacagcaaccccctccttgtcttcttcttcctgctgaccttcact
attaccaccatcatgcagtgtttccttatgagtgtgttcttcaacaaagccaacctggca
gctgcctgcagcggcatcatctacttcaccctctacctgcctcacatcctctgcttcgcc
tggcaggaccgcatcaccaacaacatgaagttggctgctagctttttgtctccagtggcc
tttggatttggcacagagtacctgtcacggtacgaggagcaaggtttgggtctgcagtgg
gataacatccggactagcccactagagaaagattcctactctttcctcacctccgtcctc
atgatggtgattgatgctgtcctctacggcatcctggcctggtatctggataatgtcttc
ccaggacagtatggcgttggtcggccattctacttccctttccagtcatcgtactggcaa
agcgctgcacctccacacacagaaatggctgatcaagatcctgagaatcctgaaccagac
aacatggagaaggacattgacagcaggggcacaccagaaacatatacctgtaacggcaca
ggggacaggaaagtctgtaagcaccaaagtaaaagagatcgaatagagagagagaaggag
ctgctgagaagacaagaggaaactccaaaccaggaggaggaggagggtcaggactcaggg
aaggaaggccagctgttctttgagtctgaccccgtaggcctggtgttgggggtacagatc
gaggacctggtgaaggtgtttgatggatgttctcgtcctgctgtcaactgtctcaacatc
aatttctacgagggccagatcacctccttcctagggcacaacggtgctggaaaaaccacc
accatgtccatcctgactggcctataccctccgacatctggcacagcgtacattaatgga
agagacattaggaccgacatagatatcatccgtacctctatggggatgtgtcctcagtac
aacatcctcttcaatcatctcacagtggaggagcacatcctattctattcactgctgaag
ggtcggagtcaggcggaggcggagagggaggtcgaggacatgctggtagacctgggactg
cctcacaagagagacgacgaggctcaaaatctctcaggtggtatgcagaggaaactgtca
gttgccatggcgtttgttggagggtcaaaggttgtcatcctggatgagccaacttcagga
gtggatccctattccaggagatccatttgggaccttcttctgaaataccgagctggccgt
acagttattctgtccactcaccacatggacgaggccgacctgctgagcgaccgcatcgcc
atcatctccaaaggacaactccactgttgcggttctcccctctttctaaaaaactgtttc
ggagtgggtttctatctgactcttgtacgccgtatgaaggatcataaaaagagagagaac
gactgtgactgtgcctcagactgctcctgtgcttgctccatatgtaccggatacaaagat
cagtctcagaaccagtcccagcatctcgacagagtcctggatggggatatagacagcatc
accaccctcatccaccaccacgtccccgaagccaagctgatcgagatgatcggccaggag
ttgacctatctgctccccaataagggcttcaagcatcgggcgtatgccagcctgtttagg
gaactggaggagactcttgctgacatgggcctcagcagcttcggcatctcagatacatca
ctagaggagatattcataaaggtcactgcagatggagaagcagcgaataatgccaccact
cctgagcagtggatgttactgcagagaaacaacggcaccaacattggtgcagatggaaaa
gaagaatataacggcatggcgcaaagtaacggcatgacccatggtgcatcagacagcagt
gcagggaggggctcccagcaggtgaaaggaacaacactgaccctgaagcagtttcatgct
ctgctaatgaagaggttccaccacgccacacgaagccagaaagatttcttggcacagatc
gtcctgcctgccagttttgtcctgattgcgctcatcttcacaatggtcgtccctccattc
ggggagtatcccagtctgactctgagcccctggatgtacgggccacagttcaccttcttc
agtaacgagcaaccgtttgaccccacaatgaaacgcttcacagaacgcgtgttaaaccca
ccgggcctggggacccgctgtatggagggagaaccactgggaatgtcctgcagaaactat
acatcagaatgggagcttcctgacgtctcccctctggtcagcaacatcttacagagtccc
gcgtggaaccagagaaacccctcaccttcctgccagtgcagcaccacaaagaagctgacc
atgatgcccatctgtccgatcggagcaggaggcctaccccctcggcaacggaccgaagca
acgggagacacgatgatggatctgacggagagaaatatctctgactacctggtcaaaacc
tatcctactctcatcagagcaggtttgaagagcaaatactgggtgaatgaacaaagatat
ggcggtttgtcggtagggggtcagcttcctattcttgacgtcagcccaaaagacattcag
gatgttttccatcaacttgggcgaatgctcaacatcacggcgggttactattctcgactt
gcactccaggagatcggtcctttcttacgatacatggaaagtgaattcaacataaaggta
tggtacaataacaaaggctggcatgccatggtggccttcatgaatgtggccaataacgcc
attctacgggccttcctacccccaactgccaaacctgtcgagtttggcatcaccgccatc
aaccacccgctcaacctcaccaaagagcagctttctgaagtcactgtgttgaccacttca
gtagatgccgtggtggcgatctgtgtgattttcgccatgtccttcatccctgccagcttt
gtcctctacctcattcaggagcgtgtgaccaaagccaaacacctgcagtttgtcagcggg
gtcagccctttagtttactgggtggccaacttcttctgggacatgatgaactactccatc
agcactgcaatggtggttggcattttcatggcttttgacaaaaagtgttacacatcaccg
tccaacttgccagctctaatagcactgcttctattgtatgggtgggcagtgactcccatg
atgtatccgatgtcctacatattcagcatcccaagtacagcttacgtctctctgtcctgc
atcaacctgttcatcggcatcaacagcagcgccatcaccttcatcctggagctttttgaa
aacaatagatctttgctgacgttcaatgagtggctgaagaaaggcctgctgatatttcct
cacttctgcctggggcgaggtcttatagacatggccatgaaccaggctgttactgatgtt
tatgccagatttggtgaggagtacacagcagaccctttccggtgggactttttggggaaa
aatattgctttcatggcagtggaaggcttcgtctactttcttctcaatcttctgattcag
tatcgtttcttcttggaccactggttatcagacagcaagaagactcgagttaaagatgaa
gatgacgacgtggcagcagagaggcagagaatttacgaaggagggagcaaatcagacatc
ctgatgatcagagacctctctaagatgtacggaggcaggaagagggcagctgtggaccgg
atttgtgtgggcgtccctgcaggagagtgctttggtctcttgggagttaatggagctgga
aaaactacaaccttcaaaatgctgactggtgacactgatgtcagctctggggaagcaact
gtggctggttacagcatcctgtcagagattctggatgtgcaccagaacatgggctactgc
cctcagtttgatgccatcgatgagctcttaaccggcagagagcatctctatctctacgct
cgtctcagaggagtgcctgagtcagagatccccagggtggcagagtggggcatccagaaa
ctgggtctgacagagtatgcggaccgatgtgcagggacttacagtggaggcaacaagcgc
aaactgtccacagctattgcaatgattggctgccccgctgtggtgctgctggatgagccc
acgacagggatggacccccactctcgacgcttcctgtggaatgccatcatgagtgtcatt
caggatggcagggccgtggtgctaacatcacacagtatggaggagtgtgaggcgctctgc
actcgattggccatcatggtcaatgggaccttcaagtgtctgggcaccatccagcatctc
aagtacaaatttggtgacggctatgtagtgaccatgaaaatcaaggcagataaacccggc
ttgtcccccgagctggagcctgtcgagagcttcatggagagctgcttcccgggctgcgtt
cagagggagaagcactacaacacgctgcagtacgagatcaccacctcctcctctcttgcc
aggatctttcagctcgtggtggccaataaagagaggctcagcatcgaagactattctgtt
tcccagacaacactagaccaggtgttcgtcaactttgccaagcaacaaacaggagaagac
gaggacgttacgttacaacgacgaactgcaggagggcgaaaagtcatcaagatctcacca
gtgaagaggaaaacatga
DBGET
integrated database retrieval system
