Scomber scombrus (Atlantic mackerel): 133991101
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Entry
133991101 CDS
T10651
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03030
DNA replication
ssco03410
Base excision repair
ssco03420
Nucleotide excision repair
ssco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133991101 (rfc1)
03410 Base excision repair
133991101 (rfc1)
03420 Nucleotide excision repair
133991101 (rfc1)
03430 Mismatch repair
133991101 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssco03032
]
133991101 (rfc1)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133991101 (rfc1)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133991101 (rfc1)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133991101 (rfc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
AAA_30
AAA_5
RuvB_N
AAA_14
AAA_7
AAA_33
BRCT_2
AAA_17
nSTAND3
AAA_16
AAA_18
RNA_helicase
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
133991101
NCBI-ProteinID:
XP_062285558
LinkDB
All DBs
Position
2:complement(18606841..18618581)
Genome browser
AA seq
1176 aa
AA seq
DB search
MDIRRFFAPTAVKPVVQKQNGNHKTDEKKNNSPLSSDEEVKKRKKETTKVKSSKMEDKRK
NSEKKRKKHAVIESDSEEEKPARKSKKSPKEKQKTNKAEPPPKKDPVQYVSETDSDSDNF
QSLKKSSKSKQNGTTKPTKSDADSARRGVKEGVKSPVRTSSAQGKTKVKSPSVLATPKSA
PPPQPKHTPTSVLDYFGSTTVQRSEKKLVVSTKRKAQTLDTDELSDEQIAQQLQLDEDME
LEKQVHEDEEFARTLAMLDEEPLAKKARKGSDEKQDHTASQKKSSPSKTNRKDSMSEDVI
SPSPKKDPTSVKASSKLAMMKKKNDEKDKGAKSQTPILATKIKISPKKEPLASTSSPMKF
TPKTATTPTALKTSPKKTESEQSTSPNDAEKKKANSTAYRNFLNRDGPRALGSKEIPKGE
ENCLEGCVFVVTGVLESMERDDAKSLIERYGGKVTGNISKKTTYLVQGRDSGVSKLDKAE
SLGTKIINEDDLLELIRTKPGKKSKYEIAAEAESKASKTRTPPSQTSRSTPKAQKISPSK
GNSRSPHTPSPSKTGLTQGHRARTEHGRTPPGRGSGHMARRELGLSSSTSPSSAPEPSSP
STTGEGASLLWVDKYRPQSLKAVIGQQGDQSCANKLLRWLQNWHKHHSGNASKPAAARFG
KFGGGKDDGSGHKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAE
SLNNTSIENFYKGTSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIRNSKIPIICMCN
DRNHMKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPALNEIILASNQDVRQ
VIHNLSMWSAKDKVMTYDQCKSDAASARKDMKMGPFDVCRKVFISGEEKSQMSLIDKSDL
FFHDYSLAPLFVQENYVHVRPAAAGGDLKSHLVLLSKTADSICDGDLVDKRIRSGQNWSL
LPTQAMYASVIPGELMRGYMSQFPTFPSWLGKYSSTNKHSRIVQDLASHMGLKTLSSRQA
VNLDYLYYLRQSLLAPLQQHGAEGASQTVQLLDDYQLVKEDVDSIMEISMWGGQPDPYSK
LDSKVKAAFTRAYNKEVHLTPYSLQVVKKGRRGGGGESEQGGEDVEKETQESEDEADGLK
ADAMIKQKKAKPTKESKKEDSGKGKGKGKGKGKAKK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgcaccgacagcagtgaagcctgtggtgcagaaacaaaat
ggaaaccacaaaacagacgagaagaaaaataatagtcctctttcttcagacgaggaggtg
aaaaagagaaagaaagagaccacaaaggtcaaaagctccaaaatggaggacaaacgcaag
aatagtgagaaaaaacggaagaagcatgcagtcatagaatcagactcagaggaggagaaa
cctgcacgaaagtcaaaaaaatctcccaaagagaaacagaagaccaacaaggctgagccc
cctcccaaaaaagatcctgtgcagtatgtctctgaaacagactcagacagtgacaacttt
cagtccttgaagaaatcctcgaaatccaagcagaatggcaccaccaaaccgacaaagtca
gatgcagacagtgctcgtcgaggtgtcaaagagggggtgaagtcacctgtcaggacctcc
tctgctcagggtaaaaccaaggtgaagtctccctctgtgcttgccactccgaagtcagct
ccgcctcctcagcccaaacacacccccacctcagtgcttgactacttcggcagcacgact
gttcagcgctcagagaagaaactggtggtcagcaccaaacggaaggcgcaaactctggac
acagacgagctcagtgatgagcaaatcgcccaacagctgcagctggatgaggacatggag
ctggaaaagcaggtccatgaagacgaggagttcgccagaactttggccatgctggatgag
gagccactggcgaaaaaggctcgcaaaggctctgatgaaaaacaagaccataccgcatct
cagaaaaagagcagcccatcaaagaccaaccgaaaggacagtatgtcggaggatgtgatt
agtccatctccgaagaaggaccccacttctgtcaaagccagctccaaactggctatgatg
aagaaaaagaatgatgagaaagataaaggtgcaaagagtcaaacacccattttggccaca
aaaattaaaatctctcccaaaaaagagcccctcgcttcgacgagctcgcccatgaagttc
acacccaagacagcaacaacacccaccgcacttaaaacttctcccaaaaaaacagagtct
gagcagagcacaagtcccaacgacgcagagaagaagaaggccaactctacagcttacagg
aacttcctcaacagagacggaccacgagctctgggctctaaggaaatcccaaagggagaa
gaaaactgtttagagggctgtgtgtttgtggtgacgggggtcctagagtcaatggagaga
gatgatgccaaatccctcattgagcgctacggaggcaaggtgacgggcaacatcagcaag
aagaccacttacctggtgcagggcagagacagcggagtgtcgaagctcgataaggcggag
agtttgggtaccaagatcattaatgaagatgatctactggagctgatcagaaccaaaccg
ggaaagaagtccaagtacgagatcgcagcagaagctgagagcaaagcctcaaagaccagg
actccccccagccagacctcaaggagcacccccaaagcccagaagatctctccctctaag
ggtaactccaggtcccctcacaccccgagtccctcaaagactggcctcacacaagggcac
agagccaggaccgaacatggtcgcaccccacctggaagaggctcaggtcacatggcccgg
agggagctgggcctttcttcttctacctctccatcttcagccccagaaccatcatcccca
tcaactactggggagggtgccagtctgctgtgggtggacaagtaccgcccacaatctctg
aaggctgtgattggccagcagggggatcagagctgtgccaataagctgctccgctggttg
cagaactggcacaaacaccacagcgggaatgcctccaagccagcagcagcaaggtttggt
aagtttggaggaggaaaagatgatggatcaggccacaaagctgctctgctctctggacct
ccgggagtggggaagaccaccactgctgccctcgtctgtgaggagttgggcttcagctac
gtggagatgaacgccagctgcactcgtagcaaaaacagcctgaaggaggtcgtcgcagag
tcgctcaacaacactagcattgagaacttctataaaggcacgtcacagacagtgagcagt
aaacacgtcctgatcatggacgagattgacggcatggctggcaacgaggatcgtggagga
atccaggagatgatcggcctgatcaggaattccaagattcccatcatctgcatgtgcaac
gatcgtaaccacatgaagatcaggtcactggccaactactgcttcgatctgcgcttccag
aggccacgagtggaacagattaagggagctatgatgtccctcgctttcaaggagggtatc
aagatcccgcctccggctcttaacgaaataatcctagcctccaatcaggatgtccgacag
gtgatccacaacctgagcatgtggtcggccaaggacaaggtgatgacgtatgaccagtgc
aagtctgacgcagccagtgcccgcaaggacatgaaaatggggccttttgacgtttgcagg
aaggtgtttatctcaggagaggagaaatcccaaatgagcctcatcgacaagtcggacctc
tttttccacgactactcgctagcgccacttttcgtccaagagaactacgtgcatgttcgg
ccagctgcagctggcggtgatctcaagtcccacctggtgttgctcagcaagactgctgac
tccatctgtgatggagacctggtggacaaacggatccgctctgggcagaactggtcactg
ctgcccacccaggccatgtatgccagtgtgataccaggtgagctcatgagaggctacatg
agtcagttccctactttccccagctggcttggcaaatactcctccaccaacaaacattcc
cgcattgtccaggatctggcctcgcacatgggtttaaagacgttgagcagcaggcaggcg
gtgaacctggactacctgtactacttgcggcagtcgctgttggccccacttcagcagcac
ggagcggagggcgccagtcaaactgtgcagctgctggacgactaccagctcgtcaaggag
gacgtcgacagcatcatggagattagcatgtggggcggacagccagacccctactccaaa
ctggactctaaggtgaaggcagctttcacacgcgcatacaacaaagaggttcaccttacg
ccgtactccctgcaagtagtgaagaagggtcgtcggggcggcggtggagaatcggagcag
ggaggggaggacgtggaaaaagaaactcaggagtctgaggacgaagctgacggcctcaaa
gctgacgccatgatcaaacagaagaaagccaaacccaccaaggagtcaaagaaagaggat
tctgggaaaggcaagggcaagggcaagggaaaaggcaaagctaagaaatga
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integrated database retrieval system
