Scomber scombrus (Atlantic mackerel): 133991252
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Entry
133991252 CDS
T10651
Name
(RefSeq) nuclear receptor ROR-beta-like isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133991252
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssco03310
]
133991252
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
133991252
Nuclear receptors [BR:
ssco03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
133991252
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PA_decarbox
Motif
Other DBs
NCBI-GeneID:
133991252
NCBI-ProteinID:
XP_062285742
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All DBs
Position
11:12495084..12522352
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AA seq
501 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQKSLECVTSGGGGSTALSLP
REDGVCGGSGEDGEEGLSRSYSSGGSSSTLSDLDDIAALPDLFDLPLTPEEASEYCSLEL
LGGGASTGNTSNSSSSSSTSSSLSNQNSPQQTMLDGADSNGILHTHSHTHPLLAHTHALL
DHLPDDCSITDLEHITQSIVKSHLETCQYSAEDMKRFTWVQYTPEETRAFQNKSAEWMWQ
QCAHHITNAIQYVVEFAKRITGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNVNNSTIFF
NGKFASAQFFKALGCDDLVSAVFDLGKGLCRLQLSDEEMALFSAAVLLSPDRPWLTEGQK
VQKLQEKVYLALQQSLHKSGGSDEKLDKMVSKLPIMKSICNLHIDKLEFFRLVHPETAYS
FPPLYREVFGSEMSLPDSTNS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatcgaggtcatcccctgtaagatctgtggggacaagtcctcgggaatc
cactatggagttatcacctgtgaaggctgcaagggtttcttccgtcgcagccagcagaac
aatgccatgtactcttgttcccgccagaggaactgcctgatcgaccgaacaaaccgtaac
cgctgccagcactgccgcctacagaagtgtctagctttaggcatgagcagagatgcggtg
aagttcggccgtatgtccaagaagcagcgtgacagcctgtacgctgaggtgcaaaagcac
cagaagtccctggagtgtgtgacctctgggggcgggggctccactgctctatccttaccc
agggaggatggtgtctgtggtggtagtggggaggacggtgaagagggcctgagccggtcc
tacagcagcgggggctccagctccaccctcagtgacctcgatgacatcgccgcactgcct
gacctgtttgacctgccgctgacccccgaagaggccagcgagtactgtagcctggagcta
cttggcggaggggccagcactggaaacacctccaactcatcatcttcttcctccacttcc
tcatccttgtccaatcagaattcgccgcagcagactatgctggatggggcagacagcaat
ggaatcctgcatacacactctcacacacatccgctgctggcacacacacacgcattgctg
gaccatctacctgatgactgctcaataacagaccttgagcacatcactcagagtattgtt
aaatcgcacctggagacgtgtcagtacagcgctgaagacatgaagagattcacttgggta
caatacacacctgaggaaacgcgcgcttttcagaacaagtcagctgagtggatgtggcag
cagtgtgcgcaccacattaccaatgccatccagtacgtggtggagtttgccaaacgcatt
actggcttcatggacctatgtcagaatgatcagattatactgctgaaagcaggctgtctg
gaggtcctgctgatacgtatgtgtcgagctttcaacgtcaacaacagcaccattttcttc
aatggaaaatttgcctcagctcagttcttcaaagcacttggttgtgacgacctggtcagc
gcagtttttgacctgggtaaagggctctgccgtctacagctgtctgacgaggagatggct
ctctttagcgcagccgttcttctatcccctgatcgaccctggctgacagaaggccaaaag
gttcagaaactccaggagaaagtctacctggctctgcagcagagcctacataagagcggt
ggttctgacgagaaactagataagatggtgtccaagcttcctataatgaagtctatctgt
aacctccacattgacaaactggagtttttccgtttggtccacccagagaccgcatacagt
ttccctccactgtaccgggaagtgtttggcagcgagatgtctctgcccgactccaccaac
agctag
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