Scomber scombrus (Atlantic mackerel): 133991272
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Entry
133991272 CDS
T10651
Symbol
fubp1
Name
(RefSeq) far upstream element-binding protein 1 isoform X1
KO
K13210
far upstream element-binding protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133991272 (fubp1)
03041 Spliceosome [BR:
ssco03041
]
133991272 (fubp1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
133991272 (fubp1)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
133991272 (fubp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
FUBP_C
KH_KhpA-B
KH_Vigilin
Secretin_N
Motif
Other DBs
NCBI-GeneID:
133991272
NCBI-ProteinID:
XP_062285777
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All DBs
Position
11:27611451..27628646
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AA seq
703 aa
AA seq
DB search
MADYSSVAPPSSNAGGGMNDAFKDALQRARQIAAKIGGDGVAAPQTNEFGYGGQKRPLED
AGGYFPMPNLNTDQPETKKVATSDGKGPDDIVVAFSAMGGMGGPPRSASEEFKVPDGMVG
FIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGSPESILTAKRLLTEIVEKGRP
APAFHHNDGPGMTVQEIMVPASKAGLVIGKGGETIKSLQERAGVKMVMIQDGPQNTGADK
PLRISGEPFKVQQAKEMVMELIRDQGFREQRGEYGSRVGGGGGGGGGGGGGGGGGGGGGD
SLDVPVPRFAVGIVIGRNGEMIKKIQNDTGVRIQFKPDDGSTPDRIAQIMGPPDQAQHAA
EIISDLLRSVQAGGPPGHGGGRGRGRGQGNWNMGPPGGLQEFTFTVPTMKTGLIIGKGGE
TIKGISQQSGARIELQRNPPPNADPNIKMFTVRGSPQQIDYARQLVEEKIGGPVTPMGGP
HGPPGPHGGPGPHGPPGPPGPPGAPMGPYNPGPYNQGPPGPHGPPAPYQPQGWGNGYPHW
QQGQPDPNKAVADANAAAWAAYYAQYSQQPQAPMTPTSGAPGTTQTNGQGDPQAAGQSGQ
ADYSKAWEEYYKKTGQQSQQPQDYTKAWEEYYKKQGQAAPQATAAAAAAASQPGGQPDYS
AAWAEYYRQQAAYYGTANPQTMGAAPQASQDYRVPEDAETSQS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcagactacagcagcgtggctccgccgtcctccaacgccggtggcggcatgaacgac
gctttcaaagacgctcttcagcgagcacgacagatcgcagcgaagattggtggtgatggc
gttgcagctcctcaaactaatgagtttggctacggaggccagaaaaggcccctggaggac
gctggtgggtattttcccatgcctaacctgaataccgatcaaccagagacgaagaaagtg
gccacgagtgatggtaagggacctgatgatatagttgtagccttttcagcaatgggagga
atgggtggtcccccaaggtcggcatctgaggaattcaaagttcctgatgggatggttgga
ttcataattggaagaggaggagaacaaatatcacgactgcagcaggaatctgggtgtaaa
atacagatcgctcctgacagcggaggaatgcccgataggtcggtgacattgacgggatcg
ccagaatccatcctgactgcaaagaggctactaacagagatagttgagaagggacgaccc
gccccggcgttccaccacaacgacggcccgggcatgaccgttcaggagattatggtccct
gcctccaaagccggtctcgtcatcgggaagggaggcgaaacaatcaaaagccttcaggaa
agagccggagtgaaaatggtcatgatccaagacggaccccaaaacacaggcgcagacaaa
ccactccgcatttcaggagagccatttaaagttcagcaagccaaagagatggtgatggag
ctgatccgagaccagggcttcagggagcagaggggcgagtatggttcccgggtcggagga
ggcggaggtggtggcggaggaggcggcggtggcggcggaggcggcggaggaggaggagat
agcttagatgttcccgtcccccggtttgcagtaggtatcgttatcggcagaaacggagag
atgatcaagaaaatacagaatgacacaggcgtcaggatccagtttaaaccagatgacggc
agcacaccagacaggatagcacagatcatgggtcctcccgaccaggctcagcacgcggcg
gaaatcatctccgacctgctgaggagcgtccaggccggcgggcctccgggacacggcggt
ggaagaggtcgcggccgtgggcaaggaaactggaacatgggacctcctggtggcctgcag
gagttcaccttcaccgttccgaccatgaagaccggactcatcatcggcaaaggtggcgag
acaatcaagggcatcagccagcagtccggggccaggattgagctgcagaggaaccctccc
cccaacgctgaccccaacatcaaaatgttcacagtgaggggttccccgcagcagatcgac
tacgcccggcagctggtggaggagaagatcgggggtccggttactccaatgggcggccca
cacggtccccctggtccacacggaggtccaggccctcatggacctccaggaccaccagga
ccccccggggctcccatgggtccatacaaccccggaccttacaaccagggacctccagga
cctcatggtcctcctgcgccttaccagcctcaaggatggggcaacggctacccacactgg
cagcagggacagcccgatccaaataaagccgtagccgacgccaacgcagcggcttgggcg
gcctactacgctcagtacagccagcagccgcaggctcccatgaccccgaccagcggagct
ccgggcacaactcagaccaacggccaaggtgacccacaggctgcaggtcagagtggacag
gcagattactccaaggcctgggaggaatattacaagaaaactggtcaacagagtcagcaa
cctcaggactacacgaaagcctgggaggagtattacaaaaaacaaggtcaagcggcccct
caggccacagcagcagcagcagcggccgcctcccagcccggaggtcagccggactacagc
gctgcctgggccgagtactaccggcagcaggctgcttactacggcacagccaaccctcag
acgatgggtgcagcaccccaagcctctcaggattacagggttccagaggatgcagaaacg
tcacaaagttaa
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