Scomber scombrus (Atlantic mackerel): 133991368
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Entry
133991368 CDS
T10651
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
133991368 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133991368 (slx4)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133991368 (slx4)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
133991368 (slx4)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133991368 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
133991368
NCBI-ProteinID:
XP_062285809
LinkDB
All DBs
Position
2:11508175..11515757
Genome browser
AA seq
1773 aa
AA seq
DB search
MNDSDQDFVDLSSKPLKRVCKPRKPRQAAHPPSSQAGNGDKRRINNRRDGGSGSKCVAAV
GGTQPVCIEAEQLVVSGGVGLDSGDTGSSVSVHSFASAAAEPRAERDLCTKDKVLNRMQQ
FRRASPQRLLHNNQSLPTGQENDRNTAPPLAERRDTPESTSSGLHLNPPDSDEALALRLQ
QELDREAAEAQSVDLEDGGLFFCQICQRDLTHMTPEGRAQHLNRCLDESETPIPAPPPPP
GVPDCPICGKKFKSQKSRSSHLKRCSSDMGVSPAVLLQAVQRQTEESQSTATANTLAQTG
GTKRKGPPKPGLPVRKKPRKKTQPLDEDTMVALALSSSLLEQERESQTETAASDASVMPV
LKWRPDTAGKGHGKRKKGAIPRPPPLLLVQEAEAALTRLQERVSALLLRSRAPSPPTPTR
CPSSLPGWNGAVPLWQKSALLDQGSTSLSDFYAPELREFITPWESATTDVASFSTNNKPD
TSLRPVAEGTPVTKTQPSVTPSSSQTASSSPAPSTPGTGQLAVGSQVLRDLMELAEDGMT
LTQCGYTAPGPAKDQRLSANLHLSGFVLDEAEEHADLYVSGFLPETSHANAQDTHRQAKR
TTDQPAGDKERGSHQSVALSRLASELSSMVNNPQLSDVQLQVDSGEVYFAHSFMVYARCP
LLAEMVHESGFGVQEEGMPAAQRVLMSDVPGEALLALLQYLYTAQFSIPASLQPHVLELA
SRFDLLELQQLCELHLAEADYTSQEDHLNDHTDLAFMELLRSMWNEEDDDDNGEQTDADG
GRDEERGLEQCQDADVASGDRELQEEQVNEEEMEEIYEFAATQRKRVEEDDSVEEKVDEE
EDGEVFTKLPEPKRCSRGFSEKSLQPNSSLDRSYNRLFSDSWGVYREEEEEPSTLHSISP
PPKTHILQYKQNQSLHKPSSELSGRTLLQSSVSVVDDHSLSPRPSTSNLPVPGLSPGIVA
DWDGGGDTVELKERLKRESRGPRSICIPLSPDSPQKKKKPELVVLSDSSEEMEVDVAVLS
SRSPSPPSPCTVQTLQSYTKLIPKLNEPSSLDFSHNGPSSVTGSSRPGSGGDQSPVDCSP
EVSWLIPSTPVQPQRTNTSSSTQTKSSMCRTQLFPKPSSPSSTVFSSPALPFNNRPQTSN
NPTRDSAHISPTDGSVSRLKQDRTVACSYSLDLNFCPKRTSSRIMTEDREVESPVLKERQ
LSHLSSSTHPYVLEPPSRQNISLNLQLHPHSSTPLHTDLRQPPVLLADSPLHTEPDKRRL
TSQERDRVPSESPEKTELGSFHLSPLSDPSGPPSSSSHKSFQSSQRRSKSSSQSLRSVES
SNHYGTGSEPRSGIRNKDRGKERDCESKGTDDEGEQEEAKGKSGEAEAADSIFQQSFMDE
PPIPFNDSWGFDACNDLGGNPGCFSLRLEDSEASSLQGHSSENNKSGHHVHLLNNQNGVT
ASAPSKSLSSQTSTSQQAHRGPSFTPSPPNPTTLTTPDKINSLLDSKIWDSWEEEEEEEI
LPLSQRMNPLKTPALSHNKKRHSLVPITPMPQYSDMDTPELKNKLNRFGVRPLPKRKMIL
KLKEIHQYTHQLVNSDSEDETPPVGGTARILKPPPTSSAAAGSRPVSCAQTVKFKEPVAI
SPVKLSREEEAEPLSASQGSNTSSTAASEESERSNPEICLSSDSDSDGGISASQTATRLQ
DRLRAVRSFILSDSGLYSQILQYQPLVLSQLQQRLKAAGIRLGAAKLVDYLDSQCITFTT
AKPGNSAPSRRRGKKTSKGAKGASRKRDVNAVL
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atgaacgactcagaccaagattttgtagacctcagctcaaagccgctgaaacgagtctgc
aagcccaggaagccaaggcaagcagcgcatccaccctccagtcaggcaggcaatggtgac
aagaggagaataaataacagaagagatggtggctctgggtctaagtgtgttgcagctgtc
ggtgggacgcagcctgtttgtattgaggcagagcagcttgttgtcagtggtggggttggg
cttgattcaggagacactgggtcatctgtttctgtccattcatttgcttctgcagcagca
gagccaagagcagagagagatttgtgcacgaaagacaaagtgctcaacagaatgcaacag
ttcaggagagccagtcctcagaggctgctgcacaacaatcagagcttgccaacagggcag
gagaacgaccgaaatactgcccctccattggcagaaagacgagatactccagaatccacc
agctcgggtctccatctgaatcccccggacagcgacgaggctctggccctgcggctgcag
caggagctggacagggaggcggcggaggcccagtcggtggacctcgaggacggaggcctc
ttcttctgtcagatctgtcagagagacctgacacacatgacccctgaggggcgcgcgcaa
cacctcaacaggtgtttggatgagagtgaaacccccatcccagctcctcctccgcctcct
ggtgtccctgactgtcccatctgtggaaagaagttcaagtcccagaagagtcgctcctcc
cacctgaagcgctgctcctcagacatgggcgtctccccggctgtcctgctgcaggctgtg
cagagacagactgaagaaagccagagcactgccactgctaacacacttgcacagactgga
ggcaccaaaaggaaaggtccgcccaagccgggtctcccagtgaggaagaagcccaggaag
aagactcaacccctggatgaagacactatggtggccctggctctgtcgtcctccctgctg
gagcaggagagagagtcacaaacagagactgctgcctctgatgcctctgtgatgcctgtg
ttgaagtggaggccagacacagcaggtaagggtcatgggaagagaaaaaagggcgcaata
ccgcgtcctcctccgctcctcctcgttcaggaggctgaggcggccctgacgaggctgcag
gaacgcgtttctgctctcctcctacgcagtcgggctccatctccccccaccccgacccgc
tgccccagcagtctgcctggatggaatggtgctgtccccctctggcagaagagtgcactg
ctggaccaaggctccaccagtttgtctgatttctacgccccggagctcagggagttcatc
actccatgggaatcggcaacgactgatgtagcctccttcagcaccaacaataagcccgat
acgtctctccggcctgtggctgaaggaacccccgtcacaaaaactcagccctccgtcaca
ccctcctcctcccagacagcttcctcctctccagctccctccaccccggggacagggcag
ctcgcagtgggcagccaggtcctccgagatctgatggagctggctgaagacggcatgacg
ctcacccagtgtggctacaccgctccaggccctgccaaagaccagaggctgtctgcaaac
ctccatctgagcggcttcgtgctggatgaggcagaagagcacgctgacctctatgtgagc
ggcttcctaccagaaacttcacacgcaaacgcacaagacacccaccgccaagcaaaaagg
acgactgatcagccagcaggagataaagagcgcggcagccaccaatcagtggcgctgtcc
agactggcatcagagctgagcagtatggtgaacaacccacagcttagtgatgtgcagctc
caggtggacagtggagaggtctactttgcccattccttcatggtgtatgcgcgctgcccc
ctgctggcagaaatggtgcatgaaagtggtttcggggtgcaggaggaaggcatgccagca
gctcagagggtgttgatgagtgacgttccaggagaggcgttgttggctttgctgcagtac
ctctacaccgcccaattctccatcccagcatcactgcagcctcatgttctggagctggca
tccaggtttgatttgctggagctgcagcagctttgtgagcttcacctagctgaggcagac
tacacgagccaggaggaccatctcaatgaccacacagacctggccttcatggagctcctt
cgttccatgtggaatgaagaggatgatgatgataatggcgaacagacagatgcggatgga
ggaagagatgaagagagaggtctagaacaatgtcaagatgctgacgtcgcatcaggcgac
agagagctgcaagaagaacaggtgaatgaggaggagatggaggagatttatgagtttgct
gccacacagagaaagagggtggaggaggatgacagcgtggaggaaaaggttgacgaagaa
gaagatggagaagtgttcacaaaactgccagaacccaaaagatgctcaagaggattcagt
gaaaaaagcctgcagccaaattcaagcctagaccgcagctacaatcgcctcttctcagac
tcttggggcgtctacagagaagaagaagaagaaccctccaccttacattctatctctccc
ccaccaaaaacgcacatcctccaatacaagcaaaaccagtcccttcataaaccctcatct
gaactgtctggcagaactttgcttcagtcctcagtaagcgtagtcgacgaccattccctc
agccctcgacccagtacatccaacctgcctgtcccaggtttgtctcctgggatagtggct
gactgggacggtggtggagatactgttgaacttaaagaacgtctgaagcgggaaagccga
ggtcctcgtagcatttgtatccccctttctcctgattccccccagaaaaagaagaaacca
gagctggtagttttgtctgactcaagcgaggagatggaggtagatgttgctgttcttagc
tcccgcagtccctctccaccttctccctgcactgtccagactctgcagagttacaccaag
ctgatcccaaaacttaatgagcccagtagtttggattttagtcacaatggtccatcttca
gtcacgggttctagtcgaccaggttccggcggtgaccagagtccggtagactgttctcca
gaggtttcctggctgatcccatccacaccagtccagcctcaaagaaccaacacgagcagc
tccactcagaccaaaagcagcatgtgcaggacgcagctgttccctaaaccttcatcaccc
tcatccactgttttctcttctcctgctttaccgtttaacaacagaccacagacctcaaac
aatccaaccagagattcagcccatatcagcccaacagatggcagtgtctccaggttgaag
caggataggacggtggcctgcagctatagtttggatctcaacttttgtcctaaaagaaca
agtagtcgcattatgactgaggacagagaagtggaatcgcctgtgttaaaagaacgtcag
ctctcacacctctcaagctcaacccacccctatgtcctcgaacctccttcaaggcaaaat
atctctcttaacctccagctgcatcctcacagcagcacacccctccatacagacctccgc
cagccccctgtccttcttgctgactccccgctccacaccgagcctgataagcggaggctg
acaagtcaagaacgggatagggtgccctctgaaagcccagagaagacagaattagggagc
tttcatctctcccccttgtctgacccttcaggcccaccctcttcttcttctcacaaaagt
tttcagagttcacagagacgcagtaaatcctcaagtcagagtctacgttctgtagagtcc
agcaatcactatggcacagggtctgagccgaggagcggaataagaaataaggacagagga
aaagagagagattgtgaaagtaaaggcacagatgatgaaggggagcaggaagaagcaaaa
ggaaaaagtggagaggcagaagctgcggactccatttttcagcagagcttcatggacgag
cccccaataccattcaatgactcgtggggcttcgacgcctgcaatgacttgggaggaaat
cccggctgcttcagtctgaggctggaagacagcgaagcatctagcctacaagggcacagc
tcagaaaacaacaagtctggtcatcacgtccacttattgaacaaccagaacggtgtgact
gcctccgctccatccaaatccctcagttcacaaacatccaccagtcaacaggctcataga
ggcccctccttcacaccctcaccgcctaatcccacgacccttaccacaccagataaaata
aacagcctcctggactctaaaatatgggacagctgggaggaggaagaagaggaggaaatt
cttcccctctctcagaggatgaacccactcaaaaccccagcgctatcgcacaataaaaag
cgtcattctttggtgcccatcactcccatgccgcagtactctgacatggacacaccggag
ctcaagaacaaactgaacaggtttggtgttcggcctttacccaagcgcaagatgatcctc
aaattgaaggaaatccatcagtacacccaccagttggtcaactctgactctgaggatgag
acaccccctgtggggggcactgctcggatattaaaaccccctcccaccagttcagcggcc
gctggcagcaggccagtctcctgcgcccagaccgtgaagtttaaagagcccgttgccatc
tctcctgtgaaactcagcagagaggaggaggcagagccgctgtctgcctcacagggctcc
aacacctcttcaactgctgccagtgaagaatctgaaaggtcaaacccagagatatgtctt
tcctcagactcagacagcgacggcggcatctcagcgtcacagacggccacgcgcctccag
gatcgcctgcgggcagtgcgctccttcatcctttctgactcaggactgtacagccagatc
ctccagtaccagcctctggtcctgtcccagctccagcagcgactgaaagcagcagggatc
cgcctgggcgccgccaagctggtggactacctggactcccagtgcatcacctttaccaca
gccaagccgggcaattcggcacccagccgcaggcggggcaagaagacgagcaagggggca
aagggagcgagcaggaaaagagatgtcaatgctgtgctttaa
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integrated database retrieval system
