Scomber scombrus (Atlantic mackerel): 133991455
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Entry
133991455 CDS
T10651
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133991455 (col13a1)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133991455 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
FliG_M
Motif
Other DBs
NCBI-GeneID:
133991455
NCBI-ProteinID:
XP_062285847
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Position
12:complement(1662439..1792500)
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AA seq
666 aa
AA seq
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MEEEQKWGVAGRPSENEQQHPSKKTQWRNWRDLSGVTICMALSLLCLGVCIVVFVRTSEL
QSRIVSLEQLHRDAQISARMLTLEQVEPVILGRLDQILEEKLAARLPKTREAREVPHTCL
CPPGPPVSRQDILCDLHGGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKSGQNG
AKGDMGQRGPKGHPGEPGPKGEKGVCGDYTHRGLFVQDVPLKTLAALRSSQAVMLKGEPG
AQGPPGPPGPPGTPGLSGASGPPGKPGEPGKPGKDPRLLPGLKGEPGGPGQKGDRGDVGP
AGPEGPKGFKGDLGIKGEKGEPSITAQGIKGEPGSPGLPGPLGSKGDKGDQGYKGESGPE
GPAGPRGPAGPTGEPGKAEILNNENDIRNIPLMGPPGLPGPSGAPGLTGSKGEVGLPGAP
GLDGEKGPRGKPGEPGPVGPAGREGPRGEGGVVGFPGPKGDKGDMGPSGSPGLDGPTGEK
GATGASGSIGLPGTMGPKGEAGDRGRSEMIYGPSGPPGPPGPVGPAGSQGLSGPKGEPGI
GIRGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGERGEKGDG
GLPGPIGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPV
PGCWNK
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagcagaagtggggtgtcgctgggagaccgagtgagaacgagcaacagcac
ccttcaaaaaagacgcagtggagaaattggagagatttgtctggcgtaacgatttgcatg
gcattatctctactgtgccttggagtttgcattgtggtttttgtccggacgtcggaattg
cagtccaggatagtaagtctggagcagctgcaccgggacgcacagatctccgcgcggatg
ttgactctggagcaggtggagcccgttatcttgggccgactggaccagatcctggaagag
aagcttgcagcgcgactaccgaagacgcgggaggcgagggaagttccccacacctgcctg
tgtcccccaggacctccagtaagtagacaagacatcttatgtgacctgcatgggggagca
ccaggtgaaccaggcctgtctatcattggaccaagaggacctcctggacaacctggaaca
agagggtttccaggctttccaggtccaattgggttggatggcaagtctggacagaacgga
gctaagggagacatgggtcagcgtggtcctaaaggacacccaggggaaccaggacccaaa
ggggagaagggtgtctgcggagactacacacatcggggcctctttgtgcaggatgtccct
ctgaaaaccctggctgccttacgctccagtcaggctgtgatgttgaagggcgagcctgga
gcgcagggaccgccaggacctccaggaccccccggaaccccaggcctgagtggagccagc
ggcccaccgggtaagccaggagaaccaggcaaaccaggaaaagacccaaggcttttacca
ggactgaagggtgaaccaggtggtccaggacaaaagggtgatcgaggtgatgtcggccca
gcaggtcctgaaggccctaagggattcaagggagatctaggaatcaagggagagaaggga
gagcccagcatcaccgcccagggaattaaaggagaaccgggatcaccaggacttccgggc
ccattgggatccaagggtgataaaggtgaccagggatacaagggggaatcaggccctgaa
ggcccagctggaccaagaggtcctgcaggcccaactggggagccaggaaaggctgaaatc
ctcaataatgaaaatgatattcgcaacataccactgatgggcccgcctggattacctgga
ccttcaggtgcccctgggctcaccggtagcaagggtgaggttggcctaccaggtgctcca
ggactggatggagagaagggccccagagggaagcctggagagcctggtcccgtaggccca
gccggtcgtgaaggtcccagaggggagggtggtgtcgtgggcttcccaggacccaaggga
gacaagggagacatgggcccatctggatcacctggtttagatggccctacgggtgaaaag
ggggctacaggagcctctggctctattggattaccaggcacaatgggtcctaaaggtgag
gctggagacagagggaggtcagaaatgatctatggtccttccgggcccccaggacctcca
ggaccagtcggcccagcgggatcgcaaggactttcagggcctaagggggagccaggcata
ggcatcaggggcgagaagggagcgacaggtcagaagggtgacaaaggagacagaggccat
cttggactccctggggctcatgggttagacggcagaccgggtccagtgggtctaatagga
ccagcaggtgttccagggccagcaggaccaaagggagaaagaggtgaaaaaggagatgga
ggattaccaggaccaatcgggcctcagggcatccctggtttagtaggaccacaaggactc
aaagggaatcggggagagaggggcaagaaaggcaacaggggggccaaaggggataaggga
gaccaaggagcacctggattagatgccccctgtccgttgggagacgatggcttacctgta
ccaggatgttggaataaatga
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