Scomber scombrus (Atlantic mackerel): 133991458
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Entry
133991458 CDS
T10651
Name
(RefSeq) vinculin-like isoform X1
KO
K05700
vinculin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04517
IgSF CAM signaling
ssco04518
Integrin signaling
ssco04519
Cadherin signaling
ssco04520
Adherens junction
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
ssco05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133991458
04518 Integrin signaling
133991458
04519 Cadherin signaling
133991458
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133991458
04520 Adherens junction
133991458
09142 Cell motility
04820 Cytoskeleton in muscle cells
133991458
04810 Regulation of actin cytoskeleton
133991458
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133991458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133991458
04147 Exosome [BR:
ssco04147
]
133991458
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
133991458
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133991458
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
Mob_Pre
HrpD6
Motif
Other DBs
NCBI-GeneID:
133991458
NCBI-ProteinID:
XP_062285857
LinkDB
All DBs
Position
12:complement(13547718..13570956)
Genome browser
AA seq
1066 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTVPVAAVQAAVSNLVRVGKE
TVQTTEDQLMKRDMPPAFIKVENSSSKLVQAAQMLKADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLAVAEVVETMEDLITYTKNLGPGMTKMSKMIEERQQ
ELTHQEHRQMLINSMNTVKELLPVLISAVKIFVATKSSRGAGVEEAERNRKFTYEKMSAE
INEIIRVLQLTTWDEDAWANKDMEALKRSLALIESKMAQAKSWLRDPHAQPGDPGEVALR
VILDEAGKVGELCAGKERKDILATAKALGQMTDQIADLRVRGQGPTPGCMQRAGQCSQGL
DLLFGKVDSAARKLEALINAKQAIARRLDAAQAWLADPNGGPEGEENIRALLAEAKRIAD
LCEDPKERDDILRSISEIAGLTARLVELRKQGKGDSPEARALAKQIGAALLTLQSKINRA
VANMRPAKPAVTLEGKMEQALRWVNNPGVDDRGVGQAAIRGMVGEGRRLAGGLLGPYRQD
MAGRCDRTEALMTSLADMAGRGEAEAPHARATAAQLQDSLKDLRQHMQEVMTQEVSDVFS
DTTTPIKLLAVAATAPPDAPNREEVFEERAGNFETHTGRLGATAEKAAAVGTGNKSTVEG
IHAAVKHARELTPQVTSAARILLKNPGNKAAYEHFDTMKNQWIDNIERLTGLVDEAIDTK
SLLDASEEAIKKDIDKCRVAMANVQPQMLVAGATSIARRANRVLLVAKREVENSEDPRFR
DTVKHASDILSHTISPMVMDAKAVAGNIQDKALQKAYLDSCLRILAAVGKVREAFQPQEL
DFPPPPPDLDQLHVSDEQAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVLSEPMMV
AARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKASDE
VTRLAKEVAKQCTDRRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQAT
EMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgtttcacaccaagacgatcgagagtatcctggagccggtggcccagcagatt
tctcacctggtcatcatgcacgaggagggggaggtggacgggaaagctatcccggatctg
acggtaccggtggctgcggtgcaggcggcagtcagcaaccttgtgcgggttgggaaggaa
actgttcaaaccacagaggaccagttaatgaagagagacatgcctcctgccttcatcaag
gtggagaactcatcttctaaactcgtccaggcagctcagatgctgaaggcagatccgtac
tctgtccccgcacgagattacctgatcgacggatccagagggatattgtctggaacgtcg
gacctgctccttacttttgatgaagccgaggtgcgtaagattatacgtgtgtgtaaaggt
atcctagagtatctggcggtagctgaagtggtggaaacaatggaggacctcatcacctac
accaagaacctgggaccagggatgaccaaaatgtcaaagatgattgaggagaggcagcaa
gagctgacgcaccaagagcaccgacagatgctcatcaactccatgaacactgtcaaagag
ctgcttcctgttcttatatcagctgtaaagatttttgtcgcaaccaagagcagtcgaggt
gccggtgtggaagaggccgagaggaacagaaagtttacctatgaaaagatgagcgctgaa
atcaatgagatcataagagttctacagctcaccacatgggacgaagacgcctgggctaat
aaggatatggaggctttgaagagatctctggctttgattgagtcaaaaatggcacaagct
aaaagctggctcagagacccccacgcacaaccaggagaccccggtgaggttgcattgcgt
gtgatactggatgaggctggtaaggtgggcgagctgtgtgctgggaaggagaggaaggat
atactggcaaccgctaaggctctcggacaaatgacggaccagatcgcagatcttcgagtc
agaggccagggtccgaccccaggatgtatgcagcgtgcaggccagtgctcacagggctta
gacttgttatttggcaaagtggacagtgctgctcgcaaactggaggctctaatcaatgcc
aaacaagccattgccaggaggctggatgctgcacaggcttggttggctgatcctaatggc
ggtcctgagggtgaggagaacatcagagcgttactagcagaggccaaacgcattgcggat
ctatgcgaagaccccaaagagcgggacgacatactacgctccatcagtgagatcgcaggc
ctcaccgctaggctcgtggagctgcgcaaacagggtaaaggcgacagccccgaggcccgt
gcattggcaaagcagattggggcagcgctccttaccctgcagtccaaaatcaaccgggct
gtggccaacatgagaccagccaagcctgccgtcactttggagggcaagatggagcaagcc
ctccgctgggtgaacaaccctggagtggacgacagaggagtgggtcaggcagcgatcaga
ggaatggttggagaagggaggaggcttgcaggaggcctgttaggcccttatcgccaggat
atggctggacgctgcgaccgaacagaggccctaatgacatctttggcagacatggctggc
aggggtgaagctgaggcgcctcatgcacgagcgacagccgcacagctacaggacagcctc
aaggacctgaggcagcatatgcaggaggtgatgacccaggaagtatcagatgttttcagt
gacaccaccacccccatcaaactgctggctgtggctgcaactgctcctcctgatgccccc
aacagggaggaggtttttgaggagcgtgcagggaactttgagacccacacaggtcggtta
ggggcaaccgcagagaaggcggctgctgtgggaacaggcaataagagtacagtagaggga
attcacgctgctgttaaacatgcccgggagctcacgccacaggtgacctccgctgctcgg
atcttgttgaagaatcctggaaacaaagcggcgtatgagcattttgacaccatgaagaat
cagtggatcgacaacattgagagactcacaggtctggtggatgaggccatagacaccaag
tctctgttagatgcctctgaggaggccataaagaaagacatcgacaagtgccgagttgcc
atggcaaatgttcaaccccaaatgcttgttgccggggcaacaagcatagcaagacgagct
aaccgggtcctgttggtggctaagagggaagtggagaactctgaagatccacggttcaga
gacaccgtgaaacatgcatcagacatcctctcacataccatctcacccatggtgatggat
gctaaggcggtggctgggaacatacaagataaagctctgcagaaagcctatctggactcc
tgtctgaggattctggctgcagtcggaaaagtcagagaagccttccaacctcaggagctc
gacttcccgcctccacctcctgaccttgaccagctgcatgttagcgatgagcaggcgccg
cccaaaccacccctgccagaaggcgaggtgccgccccctcggccccctcctccagaggaa
aaggatgaggagttcccagagcagaaggctggagaggtgctcagtgagcccatgatggtg
gcagccagacaactgcatgatgaggctcgcaagtggtccagcaagggtaacgacatcatt
gcagcagccaagcggatggccctgctaatggcagaaatgtctcggctggtgcgtggcggc
agtgggaacaaacgagcactgattcagtgcgccaaggacatcgccaaggcctcggacgag
gtgacgagactggctaaagaagtggctaaacagtgcactgacagacgcatcaggactaac
ctgctgcaggtgtgtgagcggatccctactatcagtactcagctgaagatcctctctact
gttaaagctactatgctgggacgaaccaacattagtgaggaggagtcagagcaggccact
gagatgttggtccacaacgcccagaatctgatgcagtcggtgaaggagactgtccgagaa
gcagaagcagcttccatcaagatccgcacagatgcaggattcaccctccgctgggtacgc
aaaaccccctggtaccaataa
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integrated database retrieval system
