Scomber scombrus (Atlantic mackerel): 133991478
Help
Entry
133991478 CDS
T10651
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
133991478 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133991478 (msh6)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
133991478 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
133991478
NCBI-ProteinID:
XP_062285885
LinkDB
All DBs
Position
12:11354289..11362046
Genome browser
AA seq
1379 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKPSPSPTEADLPSTVEKSNSSPKEQAKQAAQQKPIKTNR
AKPKSNSKPAKGGFNKLFGDKTPTTKESSTCSFNAGALVWAKLEGHPWWPCMVVPQPLTG
QQMRGRGRNQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFTGKPVIRRAME
LADSFMFDSPEKRLEMPRCMDPSDEEEDDDEEMELDNSTLTDEELSDDDEQANKNVKSSK
DSRRSSRGSTEKGNKAKRRRIIVASDSDASDEEFKPEHAASSSEDEEGEGTVSSEDEEKE
STQESEVDSPVKPIKRKRPAEKPADKKEKPSNILPSAPKRPPTAVAVDVKSRLSAFSAPD
SFESQANGSGSSGSTTVWDHEKLEWLQDGRRKDRQRRRQTEDDYDPTNLYVPEDFLNRNS
PGMRRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELALTFMKGNWAHSGFPEIGFA
RFSDVLVQKGYKVARVEQTETPDMMEARCKTLAKPTKFDRVVRREVCRIITRGTQTYSVL
DGTPSESQSKFLLSLKEKAEEESSGRCRTYGVSFVDTSVGYFHVGQFTDDRHCSRLRTLI
AHFAPAEVLFERGNPSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFSGT
AAKDEGTGKSFLPPLLKKMTSESDSLCLTPKEGYELALSALGGCIFYLRKCLVDQELLSM
ANFEEYVPVDVEMEKAAGPASFFARTRQRMVLDGVTLANLEIFQNGLGGTEGTLLERLDT
CSTPFGKRLLKQWLCAPLCNPSSIRDRLDAVDDLMGSQAQATEVTDLLKKLPDLERLLSK
IHSIGTLKSQDHPDSRAVLYEEVTYSKRKIADFLAALEGFQTMQEIISVLSPVSAQFQSE
LLTQVVSLKGEKDGLFPDLSAELKRWETAFDHQKARTTGNITPKAGFDPEFDQALTGIKN
CERELQDYLDRQKKRLGCKSMAYWGTGRNRFQMEVPDSVSDRNIPEEYEVKSTKKGWKRY
VTKETERLFSELQGLEEKRDAALKDCMRRLFYNFDKNYRDWKTGVECMAVLDVLLAMSRY
SQGGDGSMTRPHVLLPEGDDQLAPFLDLTGSRHPCVTKTFFGDDFIPNDIYIGCAGSSEN
EEESHASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGASD
RIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICC
RTLFSTHYHSLVEDYVNNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFN
AARLASLPEAVIQSGHRKAKEFEKSTISLRLFKKLCQFAEDTSLGNTHFVSLVQMINTL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaaagctctcttttcaatttcttcactaaatctccgccgccggtatccaag
ccgaagcccagcccttctccgaccgaggcagacctgccttccacagtcgagaagtccaac
tcctctccgaaagagcaagctaagcaggcagcacagcagaagccaatcaagaccaacaga
gccaagccgaaaagtaactccaagcctgcgaaagggggattcaacaaactgtttggagac
aagacaccaacaactaaagagagctccacatgttccttcaatgctggtgctcttgtgtgg
gcaaaactggagggtcacccttggtggccgtgcatggttgtaccgcagcctctgactgga
caacagatgagaggccgtggtcggaaccaacgcatacatgtccatttctttgatgaacct
cccaccaggggatgggtcagcaccaaatatatcagagagtaccaaggctcagacagtagc
gacgctaaaactggaggggtgtttttcactggcaagcctgtaatccgtcgtgcaatggag
cttgctgacagtttcatgtttgacagccccgaaaaaagattggaaatgcctcgctgcatg
gatccatcagatgaggaagaggatgatgatgaagaaatggagcttgacaattcaacactg
accgacgaagagctcagtgatgatgatgaacaggcaaacaagaatgtgaagtcatccaag
gacagtcgacgttcatcccgtggttcaacagaaaaaggaaataaggccaagcgccgtcgt
atcattgtagcctcagacagtgatgcatcagatgaggaattcaagccagaacatgcagca
agcagcagtgaggatgaagagggggaaggaacggtgagcagtgaagatgaggaaaaggag
agcacacaagagtcagaagttgacagccctgttaaacctataaagcgcaaacgtcctgca
gaaaagcctgctgataaaaaggaaaagccatccaacatcctgcctagtgcaccaaagcga
cccccaacagctgttgcagtcgacgtaaagtcccgtttgtcagctttctctgctcctgac
agctttgagagccaggcaaatggctcaggctccagtggaagcaccacagtttgggaccat
gagaagctagagtggttgcaggacggcaggaggaaagacagacaaaggcggcggcagaca
gaggatgactacgatcctaccaacctgtatgttccggaagactttctaaacagaaacagt
cctggtatgcgccgctggtggcagctcaaatctgagatgtttgacacagtcattttctat
aaggtggggaagttttacgagctctaccacatggatgctgtgattggagtcaatgagctg
gcactaactttcatgaagggaaactgggcgcactctggcttcccagagatcggctttgca
cgtttctcagatgttctggtccaaaaaggctacaaggtggctcgtgtagagcagacggag
accccagacatgatggaagcacgctgtaagaccctggctaagcccaccaagtttgaccgc
gtggtgagaagagaagtgtgccggattatcacacgaggaacccaaacctacagcgtgctg
gacggaactccttcagaaagtcagagcaagttcctgctgagtttaaaggaaaaggctgaa
gaggagagctctggtcgatgccgcacatatggagtgagctttgtagacacatccgtgggt
tattttcatgttggtcagttcacagatgatcgtcactgctcacgtctgcgcaccctgata
gcacactttgcccccgcagaggtgctctttgaaaggggtaacccatctgttgaaacacgc
aaaatactcaaggcgtctctgtcctctgctctgcaggaaggactcaatgcgggcactcag
ttctgggatgctcaaaaaactcttaaaaccctctcagaagaagattacttcagtggcacc
gctgccaaggatgaggggacagggaagagctttcttcctcctcttctaaaaaagatgacc
tctgagagtgattcactgtgccttacaccaaaggagggttacgagctggcactgtcagca
ctgggcggatgcattttctatttgaggaagtgtctggtagaccaggagctgctctccatg
gccaactttgaagaatatgtccctgttgatgttgagatggagaaagccgctggacccgcc
agcttttttgctcggactcgtcagcgcatggtcttggacggagtgactctggcgaacctc
gaaatctttcagaacggcttaggaggaacagaggggactctgttggagcgattggacacc
tgctctaccccgtttggcaagaggctgctgaagcagtggctgtgtgctcctctctgtaac
ccttcatccatcagggacagactggacgcagtagacgacctgatgggatctcaggctcag
gctactgaggttacagacctgctgaagaagctcccagatttggagcgtctcctgagtaaa
attcacagcatcggcacactgaagagccaggaccatccagacagcagagcggttctctac
gaggaggtcacctacagcaagcgcaagatagcagacttccttgcagcactcgaagggttc
cagaccatgcaggaaatcatttctgtcctttctccagtttctgcccaatttcagtctgaa
ttacttacccaagtggtcagtctgaagggtgaaaaggacggcctctttccagacctctct
gctgaacttaagcgttgggagacagccttcgaccaccagaaagctcgcactaccggcaat
ataacccctaaagctggctttgacccagagtttgaccaggctctaactgggatcaagaac
tgcgagagagagctgcaggattacctggacagacagaaaaaaagacttggctgtaaaagc
atggcctactggggaactgggcgaaaccgctttcagatggaagtgcccgacagtgtctca
gacaggaatattcccgaagagtacgaggtgaagtcgacaaagaaaggctggaagcgttac
gtgacaaaggagactgagcggctgttctctgagctgcaaggattggaggagaagagagac
gctgctctgaaagactgcatgaggaggctcttctacaacttcgacaaaaactacagagac
tggaagactggtgtggagtgcatggcggtgcttgatgtgctgttggccatgtcacgctac
agtcagggaggagatggatcgatgaccaggccacacgtgctgctccctgaaggtgatgac
caattagcacccttccttgacctcactggatcccgccacccatgtgtcacaaagaccttt
tttggggatgactttatcccgaatgacatctacatcggctgtgctggtagcagtgagaat
gaggaggaaagccatgcctcatgtgtcctcgtcacaggcccgaacatgggtggaaagtct
actctcatgagacagtgtggacttgtgatcattctggctcagctgggctgctacgttcct
gctgaaagcctgcgcttcacaccagttgacagagtcttcactcggctgggggcctcggat
cgtattatggccggagagagtaccttctttgtggagctgagtgagactgccagcatcctg
caccatgccactaaacactcccttgtgctcctagatgaattaggaaggggcacagccaca
tatgatggcacagcgatcgccagcgctgttgtgaaggagcttgctgagaagatctgctgt
cgcaccctcttttccacacattaccactccctggtggaggactacgtcaacaaccctgct
gtgcggttgggccacatggcgtgcatggtggagaatgaatgtgaggacccgagccaagag
acaatcacattcctctacaagttcatcactggggcttgtcctaagagctacggcttcaac
gccgctcggctcgccagcttgccagaggcagtcattcaatcaggacacagaaaggccaaa
gagtttgagaagagcaccatcagcctcagacttttcaagaagctgtgccagtttgctgag
gacacttcactgggaaacacacactttgtatcacttgttcagatgatcaacaccctgtag
DBGET
integrated database retrieval system
