Scomber scombrus (Atlantic mackerel): 133991600
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Entry
133991600 CDS
T10651
Symbol
jag1b
Name
(RefSeq) protein jagged-1b
KO
K06052
jagged-1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04330
Notch signaling pathway
ssco04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
133991600 (jag1b)
04371 Apelin signaling pathway
133991600 (jag1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ssco04090
]
133991600 (jag1b)
CD molecules [BR:
ssco04090
]
Proteins
133991600 (jag1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
MNNL
EGF_TEN
JAG1
DSL
EGF_2
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
EGF_CA
cEGF
DAG1
EGF_3
DUF5385
MAP17
Glt_symporter
Motif
Other DBs
NCBI-GeneID:
133991600
NCBI-ProteinID:
XP_062286044
LinkDB
All DBs
Position
12:complement(9848888..9876520)
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AA seq
1214 aa
AA seq
DB search
MILRRGSVVVAFLLCFLVKVSEGSGQFELQILSMHNVNGELQNGMCCDGTRNTADRKCTR
DECDAFFRVCLKEYQSRVSAAGPCSFGMGSTPVLGGNTFSFKSSVRNDKSRIILPFSFAW
PRSYTLIVEALDFNNETNDGRLIEKASHSGMINPSLHWQKLTHNGPIAQFEYQIRVSCDE
HYYGFGCNKFCRPRDEFFGHYTCDFNGNKTCLEGWSGPDCNTAICRQGCSTEHGSCKEPG
GCKCLYGWQGQYCDKCIPHPGCVHGTCVEPWQCLCDTNWGGHLCDKDLNYCGTHQPCLNG
GTCINTGPDKYQCTCAEGYSGATCERAEHACLSNPCSNGGSCSETSQGYECQCASGWSGP
SCTINIDDCSPNPCNHGGTCQDLVNGYKCHCPSQWTGKTCLIDANECDSKPCVNANSCRN
LIGGYFCECIPGWTGQNCDININDCKDQCQNGGTCKDLVNSYRCVCPPGFAGEHCERDID
ECSSSPCLNGGRCQDEVNGFQCLCLAGFSGNLCQLDIDYCSPNPCQNGAPCFNLATDYYC
ACSEDYEGKNCSHLKDHCRTTTCKVIDSCTVAVASNSTPGGERYISSNVCGPHGRCRSQA
GGQFSCECQEGFRGTYCHENINDCESNPCRNGGTCIDKVSVYQCICGDGWEGDHCEINID
DCSTNPCHNGGTCRDLVTDFFCECKNGWKGKTCHSRESQCDEATCNNGGTCHDEGDTFQC
KCSPGWEGTTCNIAKNSSCLPNPCENGGTCVVTGESFTCVCKEGWEGPTCTQNTNDCSPH
PCYNSGTCVDGDNWYRCECAPGFAGPDCRININECQSSPCTFGSTCVDEINGYRCLCPPD
RTGSHCQEVTRKHCSVNGHVTPDGAKWDEDCNTCHCSNGKVVCTKMWCGPMSCHLGAKGR
GGCPSGQSCIPIKENHCFVKPCLSLGECWRSNPPPAPTKCHPSSSYQDNSCANITFTFNK
ETMPQSLTVEDVCKQLRRLYVVKNFSLEHSVSITCDPSYSASNEIHVCISTEDHRLDRSP
IKEITDRIIDLVSKRNGNNTIITAIAEVRVPSPSKTDYLVPLLSSVFIVIWVLVLVSILL
WCMRRRRKQSNHNGTTAAGSEDNTTNNVREQLNQIKNPIEKHVGLTVAIKDYENKNSIIA
KIRTNHPEGDEDDKERHLQKGRFAKQPAYTLVERDEKTPISNPNSTSKHPNWTNKQDNRD
LETANSINRMDYIV
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgattttgagacggggctcagtcgttgttgcctttttgctctgcttcctcgtgaaggtg
tcagagggatcgggacaattcgagttgcaaatcttatcgatgcacaatgtgaacggagag
ctgcagaacggcatgtgctgcgacggcacacggaacacggcggatagaaaatgcacacgg
gacgagtgcgatgcgttttttagagtttgcttgaaggaataccagtcgagagtttctgct
gcggggccctgcagcttcggaatgggatctacgcctgtcctcggagggaataccttttct
ttcaagagctctgtgaggaatgacaaatcgcggataatattacccttcagttttgcctgg
ccgaggtcctacactttgatagtggaagccttggacttcaacaatgaaaccaatgacggg
aggttgatagagaaagcctctcactccggcatgatcaaccccagcctgcattggcagaag
ctgactcacaacggccccatagcacagttcgaataccagatccgagtcagctgtgacgag
cactactacggcttcggctgcaacaagttctgtcggcccagggacgagttcttcgggcat
tacacatgcgactttaacggaaacaagacgtgtctggaaggctggtccggacctgactgc
aacacagctatatgccgacaaggctgcagcaccgaacacggatcatgtaaggagccaggt
ggatgcaagtgtctgtatggctggcaaggccaatattgtgacaagtgcatccctcaccct
ggctgtgtacatggcacctgtgtagaaccctggcagtgcctgtgcgacaccaactggggc
ggccatctttgcgataaagatctgaactactgtggcactcaccagccatgcctgaatgga
gggacgtgtatcaacacaggacctgacaagtaccagtgcacttgtgctgagggctactct
ggagccacctgcgagagagcggaacacgcctgtctgtccaatccgtgctctaatggaggg
agctgctccgagaccagtcaaggctacgaatgtcagtgcgcatccggctggagcggcccc
tcctgcaccatcaatatcgacgactgctctccaaacccctgtaaccacggaggtacctgt
caggatctggtcaacggctacaagtgtcactgtccttcacagtggacggggaagacgtgt
ttgatagatgccaacgaatgtgacagcaagccttgtgtcaacgccaactcgtgccgcaac
ctgataggcggctacttctgcgagtgcatccctggttggacggggcagaactgcgacatc
aatatcaacgactgcaaggaccagtgccagaatggaggaacttgcaaggatttggtaaac
agctatcgttgcgtgtgcccccctggcttcgccggcgagcactgcgagagggacatcgac
gaatgctcgagctcgccgtgtctgaacggcgggcgctgtcaggacgaagtgaacggcttc
cagtgcctgtgtctggctggcttctcaggaaacctctgccagctggatatcgattactgc
tcgcccaacccgtgtcagaatggagcgccctgcttcaacctggccacagactactactgc
gcatgctcggaggactacgagggcaaaaactgctctcacctcaaagaccactgtcgcacc
accacgtgtaaagtgattgacagctgcactgtcgccgtagcgtccaacagcacgccagga
ggagagcgctacatttcgtccaatgtgtgtggacctcacggccgctgccggagccaggct
gggggccagttcagctgcgagtgccaggagggcttcagagggacctactgtcacgagaac
atcaatgactgcgagagcaacccatgtcgtaatgggggaacctgcatcgacaaagtcagc
gtgtaccaatgcatctgcggcgacggctgggagggggaccactgcgaaatcaacatcgat
gactgcagcaccaacccctgtcataatggagggacatgtcgagacctggtgactgatttc
ttttgcgagtgcaagaatggctggaagggaaagacgtgccactcccgcgagagtcagtgc
gatgaagccacttgcaacaacggtggcacctgccacgacgagggcgacacgttccagtgc
aagtgttcaccagggtgggaaggcacgacttgtaacatagccaagaactcgagttgtctt
ccaaacccgtgtgagaatggaggtacctgtgtggtgacgggggaatccttcacctgcgtc
tgcaaggaaggctgggagggtcccacatgcacgcagaataccaatgactgcagtccgcac
ccatgctacaacagcggaacctgcgtcgacggggataactggtaccgctgcgagtgcgcc
ccgggcttcgcgggtccagactgtcggatcaatataaacgagtgccagtcctctccttgt
actttcggctccacctgtgtagatgagatcaatggatatcgctgcttgtgcccaccagac
aggactggatcccactgtcaagaagtcacaagaaaacattgctctgttaacggacacgtc
acccctgatggagccaaatgggatgaagactgcaacacttgccactgttccaatgggaaa
gttgtgtgtacaaagatgtggtgtggccctatgtcgtgccacttgggtgccaaaggtcga
ggcgggtgtccttcaggccagagctgcatccccatcaaagagaaccactgctttgtgaag
ccctgtctcagcctgggagagtgctggcgctccaaccctcccccggctcctaccaaatgc
caccccagctccagttaccaggacaacagctgcgccaacatcaccttcaccttcaacaag
gagaccatgcctcaaagcttgactgtggaggatgtgtgtaagcagctgaggcgcttgtat
gtagtgaagaatttctccttggagcattctgtgtccataacctgtgacccctcatactca
gccagcaacgagatccacgtctgcatctctactgaggaccatcgcttggaccggagcccc
attaaagagatcacagaccggataattgacctggttagcaaacgcaacgggaacaacacc
atcatcaccgccatcgcagaggtgcgcgtgccaagccccagcaaaactgactacctagtg
cccctcctcagctccgtcttcattgtcatctgggtcctcgtgctggtctccatcttgctg
tggtgcatgcgtcgccggcggaaacagagcaaccacaacggcacaacggccgccggctcc
gaggacaacacgaccaacaatgtccgggagcagctgaaccagatcaagaaccctatagag
aagcacgtgggcctcacggtggccatcaaagactatgaaaacaagaactccatcattgcc
aaaataaggacaaatcatcccgagggggatgaggacgacaaggagaggcacttacagaag
ggccgctttgccaaacagccagcatacacactggtggagagggacgagaagacgcccatc
tccaaccccaactccacatccaaacatccaaattggactaataaacaggacaacagagac
ttggagacagcaaacagcataaacaggatggactacattgtatag
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