Scomber scombrus (Atlantic mackerel): 133991613
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Entry
133991613 CDS
T10651
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133991613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133991613
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133991613
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
133991613
Messenger RNA biogenesis [BR:
ssco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
133991613
Transfer RNA biogenesis [BR:
ssco03016
]
Prokaryotic type
tRNA degradation factors
133991613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
133991613
NCBI-ProteinID:
XP_062286065
LinkDB
All DBs
Position
12:complement(21444076..21456147)
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AA seq
769 aa
AA seq
DB search
MMFLLRLRLPLARLQTRLCHQSVYSSHANPRRVGVDIGEKKLEISSGKFARFADGSAVVQ
LGETSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDNEILTSRLI
DRSIRPLFPAGYFYDTQILCNLLAVDGVNDPDVLAINAASAALALSDIPWNGPVGAVRVG
MVDGQLLINPTRAEMTSSSLNLIVVGAPSSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQLMREQKVTKRTPVKVFSAPADMVEYVRRSASDRIYAVFTDYTHDKISRDEAIN
KVRLETEEDVKEKFPQAEPFEVIESFNTVSKEIFRNLVLNEYRRCDGRELTALRDISCSV
DLFKPLHGSALFQRGQTQVLCSVTFDSLESSIKADIITTALSGIKDKNFMLHYEFPPYAT
NEVGKVGGINRRELGHGALAEKALRPIIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPISSAVAGVAVGLISKPNPEKPAEIQDYRLLTDILGIEDYLGDMDFKLAGTNKG
ITALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNKCIAKPRETRKENGPVVENVRVP
ASRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFISEICKDDQE
MQLEFGAIYTATITEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLDVGQQIQV
KFFGRDPTDGRMRLSRKVLQSPAASVVKTLSEKQSISMQSSNHTTNTDL
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttctgctcagactgaggctgccgctggctcggcttcagacccgtctgtgtcac
cagagtgtttacagcagccatgcaaaccctcgcagagttggagtggacattggagagaag
aaacttgagatctcttctgggaagtttgccagatttgctgatggatccgctgtagttcag
ctgggggagacgtctgtgatggtgactgctgtgagcaaaaccaaaccctctccgtctcag
ttcatgcctcttgtggtggactacagacagaaagcagcagctgctggtcgaatccccacc
aactatttgaggcgagagttgggcaccactgataatgagattctcactagtagactcata
gacaggtcgattagacctcttttccctgccggttacttttatgacacccagatcctttgt
aacttgctagctgttgatggtgtcaatgatccagatgtgctggctatcaatgcagcttct
gctgctctggcgctgtctgacatcccctggaatggacctgttggtgctgttcgtgtgggc
atggtagatggacagttgctgatcaaccccactcgggcagagatgacttccagcagtctc
aatttgattgtggtgggagcccctagcagtcaagtggtgatgatcgaggcgtcggctgag
aacgtgctgcagcaggacttctgccatgcggtgaaggtgggagtcaaacacacccagcag
atcatactggccatccagcagctgatgcgggagcagaaagttactaagcgcaccccggtc
aaagtcttctcagcccccgctgacatggtggaatatgttcgcagatcagcttcagacagg
atctatgccgttttcacagattacactcatgataagatttctagagatgaagccatcaac
aaagttcgactagaaactgaagaggacgtaaaagaaaaatttcctcaagctgagcctttt
gaagtcattgagtccttcaacactgtgagcaaagaaatcttccgcaatttggtgcttaat
gagtacagaaggtgtgatgggagggagttgactgcgttaagggacatttcttgcagcgta
gacctctttaaaccgctccatggctcagctctgtttcagagaggacaaacacaggtgctg
tgcagtgtcacatttgattcactggaatccagtatcaaagcagatatcatcaccacagct
ttgagtggcatcaaagacaaaaacttcatgcttcattatgaattccctccatatgcaaca
aatgaggttggaaaggtgggaggtataaacaggagagagctcggacatggcgccctggcc
gagaaggctctgagaccaatcattcccaaagacttccctttcactatcagggtcacttct
gaggtgttggagtcaaatggatcctcatcaatggcctcagcttgtggaggcagccttgct
ctcatggatgcaggtgtgcccatatcttctgctgtggcaggtgtcgctgttggcctcatc
tctaaacccaacccagagaaacctgctgagatccaggattacagattacttactgatatt
ctgggaattgaggattacctcggagacatggacttcaaattggcaggaacaaacaaaggc
atcactgctttacaggctgacgttaagattccaggtttgcctctgaagttggtcatggag
gctatccagcaggccacagtggcaaagagggaaatcttgggcatcatgaacaaatgtata
gcaaaaccaagagagaccaggaaggaaaatggacctgttgttgagaatgtgcgggtacct
gcctctagacgagcccgctttgtcggtccaggaggctataaccttcgccggctacaagct
caaacaggtgtgacaataagtcaggtggacgaggagactttctctgtgtttgctccaacg
ccaggagccatgaacgaagcccaagagttcatcagtgagatctgcaaagacgaccaagaa
atgcagctggagttcggtgctatctatactgcaaccatcactgaaataagggacatcggg
gtcatggtgaaactctatcccaatatgagtgctgtcctgctgcacaactcacagctggac
cacaaacggatcaaacatccaagtgctttgggtttagacgtgggacagcagatacaggtc
aaattctttggacgggacccaacagacggcagaatgagactttcgcggaaggtgctccag
tcccctgctgcatctgtcgtcaagactctaagcgagaaacagagcatctccatgcaatca
agcaaccacacaaccaacacagatttgtga
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