Scomber scombrus (Atlantic mackerel): 133991641
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Entry
133991641 CDS
T10651
Name
(RefSeq) LOW QUALITY PROTEIN: girdin-like
KO
K25392
girdin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ssco03037
]
133991641
Cilium and associated proteins [BR:
ssco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
133991641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
KASH_CCD
DUF4472
Shugoshin_N
DUF5043
Motif
Other DBs
NCBI-GeneID:
133991641
NCBI-ProteinID:
XP_062286112
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All DBs
Position
12:21512225..21578262
Genome browser
AA seq
2003 aa
AA seq
DB search
MESEVFTPLLEQFMLTPLVCWVKTAGQPTVTDGNTLSEYIELVDGIYLNEIMLEINPKAT
VQRTNKKVNNDPTLRIQNLSILIRQIKAYYQENLQQLVMMPLPNVLVLGRNPLSEQGLDE
MKKLLLLLLGCAVQCEKKEEYIERIQTLDFETKAAIASHIQEVTHNQENVVDMQWFESGE
MPPEDLDSVSRNLAFHLKRLVDERDTQLETIVELTQERDCVQLSPMAPYPVQSPNDSPSM
RRTESRQHLSVELADAKAKIRRLRQELEEKSEHLLDTRQELENMEVELKRLQQESYQLLS
DARSARAYRDELDAIREKAIRVDKLESELSRYKDRLHGIEFYKARIEELKEDNQVLLETK
SMLEEQLDVSRTRSDKLHLLEKENLQLKSKMHDLEMERDMDRKRMEELLEENLVLEMAQK
QSMDESLHLGWELEQLSKTPDTTEVPQKSLGEEVNELTSSRLLKLEKDNQTLLKTVEELR
AAASQDVATKLSKASQENQKLNQKLGQLESELTSDRESLRSAESLSTDLMKEKALLEKTL
ESLRENSERQLKGLEQENKHLSQTVSSLRQRCQVGAEARVKDVEKENRVLHESICETTAK
LNKMEFERKQLRKELEVMKEKGERAEELEILMQKLERDNESLQKKVASLGITCEKVSSLE
KENTDLEAEGRRLKKKLDSLKNMAFQLEALEKENTQLEQENLDLRRSAESLRSAGAKAIQ
LEVENRELESERSQLKRSLELLKASSKKTERLEVSYQGLDTENQRLQKALENSSKKIQQL
EAELQEVETENQTLQRNLEELKISSKRLEQLEQENKTLEQESSQLEKDKKLLEKENKRLR
QQTEIRDSKLEDSNQRITCLEKENRTMGKEIXFRDSCTRVKDLERENKELVKLASIDKKT
LNTLREELVSEKLRTQQMNNDLEKLTHELEKIGLTKERLLHDEGSDDRFRLLETKLESTL
KSSLEIKEEKIAALEARLQESSNLNQQLRQELKTVKKNYEGLRQREEEERMVQSSPPRGG
EDPQAVSKWEKESHEATRELLKVKDRLIEVERNNATLQAEKAALKSQLKQLETQSSNLQA
QIVAVQRQTASLQENNTSLQTQNAKLQVENSTLSSQSAALMAQNAQLQTQQSSVEGEREG
ALKEKDELRSTYELLLRDHEKLAALHERQAVEYEALIGKHGGLKSSHKSLEQQHRDLEDK
YKQLLQRKGELEELEKNLKQQQEKMALENETHQATADHCKQLKEENDRLNTTYRQLVKDN
DNLQLDHKNIKSQLNSATLEQTKLEAEFSKLKEQYQQLDITSTKLTNQCELLSQLKGNLE
EENRHLLDQIQTLMLQNRTLLEQTMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQY
KFYDPSPPRRRGNWITLKMKKLIKPKSRERMRSLTLTPSRSEFGDGFLTFPQDSQDSSSV
GSGSNSLDDTLNQKKSSMTAIKRLPFMRNRSKDKDKAKAIYRRSMSMNDLLQTMAVVGGP
GAQWAGSIENLDGAEGGDARMTGGSRHGGQRMKELALSTNAIDCAALTLPTARHSRAKLR
LQVKENVSCEDVAGSLDDPKCQASRPTSLHSNRTTSSNSNNNSHLTSPLEGKGTLNGSLS
RPHSESSGEFSLSLDQEVWSSSGSSPVQQPTSSRSSHQSPLQLRRSLEPSTAAGGPGQTQ
IRKTESLGNEVLSLQQFLDEGIDPAESGSQENLTVDSPRLSTSSEHVQKERTSTRGRGIL
RSASGKATSVSDRPPRSSGQPGRPTLRKAESTRVKGSVPMRSSLSSQGKATSVCERLDSA
SSTLPRASSVISTAEGTTRRTSIHDLLSKDNRQPVSVDASPPVAATKAAPSEYHPNSTNL
KGPLTTTIPMPKSLSLPCHSLEDPELSTLESFLGPSFTVESVFMDSIFSESAGKNLPFLS
LNPTLVSNISGPPVTNKAHPPPTPNHISNQNQTPHGQSNGQTRSSPACVKEYNEGDEPNC
VNNSDQSLNPEDNQSLWYEYGCV
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcgaggttttcaccccgttgctggagcagtttatgctcacgcctctggtctgc
tgggtgaagacagccgggcagccgacagtgactgatggcaacacattatcggaatatatt
gaattagtggatgggatttacctgaatgaaatcatgcttgaaataaatcccaaggccacg
gtgcagaggacgaataagaaagtgaacaatgaccccacactgcgcatacagaacctttca
attctcatcaggcagattaaagcctactaccaggagaatctccagcagctggtgatgatg
cctttaccaaacgtgttggttctgggacgaaaccctctctctgaacaaggtctggatgag
atgaagaaactattgctgctactgctaggctgtgctgttcagtgtgagaagaaggaagag
tacatcgagcgtatccagactctggactttgaaaccaaagctgccatagcatcccacatt
caagaggtgactcataaccaggagaacgtagtggacatgcagtggtttgaaagtggagaa
atgcctcctgaggacttggacagcgtctccaggaacctggcttttcacctcaaacgcctg
gtggatgaaagggacacacagctggagactatagtggagttaacacaggagagagactgt
gtgcagctgtctccaatggctccctatccagttcagtctcccaacgactccccaagcatg
aggaggaccgaaagccggcagcacctctctgtggagttggctgatgccaaggccaagatc
agacgccttcggcaggaattggaggagaagagtgagcaccttttagataccaggcaggaa
cttgagaacatggaggtggagctcaagaggcttcagcaagagagctaccagctgctgtca
gatgctcggtcagctcgggcttaccgtgatgagctggatgctattagagagaaagccatc
cgtgtcgacaaactggagagcgagctgagccgatacaaggaccgacttcacggcattgag
ttttacaaggccagaatcgaggagctgaaggaggacaaccaggtcctgctggagactaag
tccatgctggaggagcagctggatgtgagcaggacccgctctgacaaactgcacctcctg
gagaaggagaatctgcagctcaaatccaagatgcatgacttggagatggagcgggacatg
gaccgtaagcgtatggaagaactgttggaggagaacctggtgctagagatggcccagaaa
cagagcatggatgagtccctacacttaggctgggagctggaacaactatctaagacacca
gatacgaccgaagtccctcagaagtctctgggtgaggaggtgaacgagctcacttccagc
cgcctgttgaagttggagaaagacaaccagaccttgctgaagacagtggaagagctcaga
gcagcagccagtcaggacgttgcgacaaaactgagcaaagccagccaggaaaaccagaaa
ctgaaccagaaattggggcagctggagagtgaactgacctcagacagagagtcactccgc
agtgctgaatctctcagtactgacctgatgaaagagaaggctttactggagaagactctt
gaatcactcagagaaaactctgagagacagctgaagggcttggagcaggaaaacaaacac
ctcagtcagactgtgtcgtccctgcgtcagcgctgccaggtgggagccgaggctcgggtc
aaggatgtggagaaagagaatcgtgttctccacgaatctatctgtgagacaactgccaaa
ctcaataagatggagtttgaaaggaaacaactacgtaaggagcttgaggtgatgaaggag
aaaggtgagagagcagaggagttggaaattctgatgcagaagctggagagggacaacgag
agtctgcagaagaaagttgccagtctaggaatcacgtgtgaaaaggtgtcttcgttagag
aaggagaacactgatctggaggcagagggccgtcgtctgaagaagaagctggacagtcta
aagaacatggccttccagctggaggctctggaaaaggaaaatactcagttggagcaggag
aacctggacctccggcgctcggctgagagcctccggtcagctggggccaaggccattcag
ctggaagttgagaacagggagctggaaagtgaaaggagccagctgaagcgcagcctggag
ctcctcaaggcttcctccaagaaaactgagagattagaagtgagttaccagggcctagat
acagagaaccagcgcttgcagaaggctttagagaacagcagcaagaagatccagcagttg
gaggcagagctgcaagaggtggagactgagaatcaaaccctccaacgcaacctggaagag
ctcaagatctccagtaaacgcctggaacagctggagcaggagaacaagactttggagcag
gaaagctcccaactggagaaagacaagaagcttctggagaaggagaacaagcgtctgagg
cagcagaccgagatccgcgactccaagctggaggacagcaaccagcggatcacctgcttg
gagaaagagaatcggaccatgggcaaggagattnncttcagggactcctgcaccagagtc
aaagacttggagagagaaaacaaggagttggttaaactggccagcattgataagaagacc
ctcaacacactcagagaggagctggtaagcgagaagctgcggactcagcagatgaataac
gatctggagaaactgacccacgagttggagaagattggactgactaaggaaaggctccta
catgacgagggctcagacgacaggtttaggctcctggaaaccaaactggagtcgactctg
aagtcctctttggagattaaggaggagaagatcgccgccctagaggccaggctgcaggag
tcctctaacctcaaccaacaacttcgccaggagctcaagacggtgaagaaaaactatgag
gggctgcgtcagagggaggaggaggagaggatggtgcagagctcgccccctagaggaggg
gaagaccctcaggctgtcagtaaatgggaaaaggagagtcatgaagccaccagggaactg
ctgaaagtcaaagacagactcattgaggtggagaggaataatgccacgctccaagctgag
aaggcagccttgaagagccagctcaaacaactggaaactcagagctccaacctgcaggct
cagatagtggctgtgcagagacagactgcctccttacaggagaacaatacatccctacag
acgcagaacgccaaactgcaggtggagaactccacccttagctctcagagtgcagccctc
atggcccagaacgcccagctgcagacccagcagagcagcgtggagggcgagcgagaggga
gcgctgaaagagaaagatgagctgaggtccacctatgagttgctcctccgtgatcatgag
aagctggcggcactccatgagaggcaggcggtcgaatatgaagccctgatcgggaagcat
gggggcctgaagagctcccacaagagcctggagcagcagcacagggacctggaggacaaa
tacaagcagcttctgcagaggaagggcgagctggaggagctggagaaaaatctgaagcag
cagcaggaaaaaatggcattggagaacgaaactcatcaagccacagctgaccactgcaaa
cagctcaaagaggaaaatgatagactgaacactacatatcgtcagctggtaaaggacaat
gacaatctccagctggatcataaaaacataaagagccagctgaacagtgccacgctggag
cagaccaagctggaggccgagttctctaaactgaaggagcagtaccagcagctggacatc
acctccaccaagctgaccaaccagtgtgagttgttgagccagcttaaaggaaacctggag
gaggagaatcgacacctgttggaccagatccagactctgatgctacagaaccgtacgctg
ctggagcagaccatggagagcaaagacctcttccatgtagaacagagacaatacatagac
aagctgaatgagctgaggagacagaaggagaagctggaggagaagatcatggaccagtat
aagttctatgacccctcacctccacgcaggcgtggcaactggatcactctgaagatgaag
aagttgatcaagccaaagagtcgggagaggatgcgttcactcacgctgactccatctcgt
tcagagtttggagacggattcctgacctttccccaagacagccaggacagttcttctgta
ggctctggctccaactcgctggacgacaccctcaaccaaaagaagagcagcatgacagct
ataaaaaggttgcctttcatgaggaacagatccaaggacaaagacaaggccaaggccatc
taccggcgctccatgtccatgaacgacctgttgcagaccatggcggtggtggggggtccc
ggggctcagtgggcgggcagcattgagaacctagacggcgctgagggcggagatgccagg
atgacaggtggcagcaggcacggtgggcagcgcatgaaggagctcgccttgtccacaaat
gcaatcgactgtgccgccctcaccctgcccactgcaaggcacagcagggccaagcttcgg
cttcaggtcaaagaaaatgtgtcctgtgaagatgttgccggctcattagatgaccccaaa
tgtcaagcctcgagacctaccagtctccatagcaacaggaccaccagtagtaatagtaac
aataactcccacctcacttctcctctggagggcaaaggcacattgaacggcagtctcagc
aggcctcacagtgagagcagcggagagttcagcctgagtttggaccaggaggtgtggtcc
agcagcggcagcagccccgtccagcagcccacctcctcacgctcctcccatcagagcccc
ctgcagctgcgcaggtccctcgaaccgtccaccgccgcaggcggccccggccagacccag
atcaggaagacagaatccctgggcaacgaggtgctgtccctgcagcagtttctggatgag
ggtattgatcctgcagagtccggcagtcaggagaacctcacagtagactctcctcgcctc
tccacttcttctgagcatgtgcagaaagaacgcacttccacgagggggcggggcatatta
cgctcagccagtgggaaagcaacgtcggtatctgatcggcccccgagatcttcaggacaa
ccagggcgccccaccctgcggaaggccgagagcacccgtgtgaaaggctccgtcccgatg
cgctctagcctgtcctcgcagggcaaagccacatctgtctgtgaacgcctggactcagct
tcctctacactgccccgggccagcagcgtcatctccaccgcagagggtaccacacggcgc
accagcatccacgacctgctgtcgaaggacaaccggcagcccgtgtccgtcgacgcctct
cctcccgtcgcggccaccaaggctgcacccagtgagtaccaccccaacagcaccaaccta
aagggaccccttaccaccaccatccccatgcccaagtcactcagcttaccttgccatagc
ttggaggaccccgagctctccaccctcgagtctttccttggcccctccttcactgtagag
tcggtgttcatggactccatctttagtgagtcagcgggcaaaaacctccccttcctgtct
cttaaccccacccttgtcagcaacatcagtgggcccccagttacaaataaagcacaccct
cctccgaccccaaaccacatttccaaccaaaaccagacccctcacggccaatcaaacggc
cagacgagatccagccccgcctgtgtgaaagagtataacgagggcgatgaacccaactgt
gtgaataattcggaccagtctctcaacccagaggacaaccagtccctgtggtacgagtac
gggtgtgtgtga
DBGET
integrated database retrieval system
