Scomber scombrus (Atlantic mackerel): 133991706
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Entry
133991706 CDS
T10651
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133991706 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133991706 (polr1b)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133991706 (polr1b)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
133991706 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
133991706
NCBI-ProteinID:
XP_062286196
LinkDB
All DBs
Position
12:complement(7353016..7359141)
Genome browser
AA seq
1133 aa
AA seq
DB search
MDFSTKWTNLPKGPSLKNLTEGRFGVLKEDQHAAVQDLTKAHIESFDQAVTDGLSRVVQA
IPPLEFTFRNERISLSYVDAMIYNPMVAKGSICKEMRVFPAECRARRCSYKGKIVADVSW
SVNGVPKGIIKQSLGQVPIMVKTKLCNLHGMSPKELVEHHEEAEEMGGYFVVNGIEKVIR
MLIMPRRNYPIAMSRPKWKSRGQGYTQYGISMRCVKDEHTAVNMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDYQIYQELIKGREDNSFYKSCVSEMLRIVNEENCITRSSV
LNYLGERFRVKMSLPDWYTNEQCANFLLDECLCIHLRSSIEKFYLLCLMTRKLFTYAKQE
CMEENPDSIMCQEVLTPGQLYLMFLKERLTAWLVSVKLAFDKRGSRLSALTAENLMKMFN
LGTDVTRPFEYMLATGNLVSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAKM
RTTSVRKLLPESWGFMCPVHTPDGEPCGLMNHMTASCEIVAQTLSTVSLPGLLCSLGVTA
VDGTPGQAFSDCYPVVLDGAVVGWVETELASTVVDSLRRFKVLREKRIPPWTEIVLVPKT
GKASLYPGLFLFTTPCRMVRPVRNLAHGQQEMIGTFEQLYINVGILENEIEPGVTTHQEL
FPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPL
VRPYMYDHYNLDNYPSGTNAIVAVVSYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDL
ADKVRGDDSVVFGAKPDDPKVMDKLDADGLPHIGSTLKYGDPFYGYINLNTGQTFVTFYK
SQEACVVDNIKVCSNDTGSGRFKRVCITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDM
PFTESGMSPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLSHDATPFTFSEEDAALEYF
GKMLRAGGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT
NQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLISPLLE
KPPPYWSAMLHRKTVCTLCGKSDSIDSVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcaactaagtggactaatttaccaaaaggtcctagtttaaagaatctgaca
gagggacgatttggggtcctgaaggaggatcaacatgctgctgttcaggacttaactaaa
gctcacatcgagtcatttgaccaggctgtcactgatggactgagccgggtcgtgcaggca
atcccacctttggagttcacgttccgaaatgaaaggattagcctgtcttacgtcgacgcc
atgatctacaaccccatggtggccaaagggagcatctgtaaggagatgagggtgtttcca
gcagagtgtcgggcgagaagatgctcttacaaaggcaagattgtggcggacgtcagctgg
tcggtcaacggcgtccccaaaggcatcattaaacagtccctgggtcaagtgccgattatg
gtgaagacaaagctgtgtaacctgcatggcatgtcccctaaagagcttgtggaacaccat
gaagaagcagaggaaatgggaggttattttgtcgtgaacggcatcgagaaggtcattcgt
atgctgataatgccgaggaggaactatccgatcgccatgtcgagaccgaagtggaagagc
agagggcagggatacacgcagtatggtatttcaatgcgctgcgtgaaggatgagcacaca
gccgtcaacatgaatctgcattatctggaaaacgggaccgtgatgctcaacttcatctac
cagaaagagctcttcttcctcccactaggcttcgcacttaaggctctggtggacttcaca
gactaccagatctaccaggagctcatcaaaggccgtgaggacaactccttctacaagagc
tgcgtctccgagatgttgcgcatcgtcaacgaggagaactgcatcacccgcagcagcgtg
ctcaattacctcggagagcgcttccgggttaagatgagccttcctgactggtacacaaac
gagcagtgtgccaacttcctgctagatgagtgcctctgcatccacctgagatccagcata
gagaagttctacctgttgtgtctgatgaccaggaagcttttcacgtacgccaagcaggag
tgcatggaggagaaccctgacagcattatgtgtcaggaggtgctcactcctggtcagctc
tacctcatgtttctgaaggaaagactgaccgcctggttggtgtccgtgaagttggccttt
gacaagagaggcagcagactgagcgcattgactgctgagaacctgatgaagatgttcaac
ttgggcacagatgtgaccaggccctttgaatacatgcttgccaccgggaacctcgtctcc
aagacgggtctcggcatgctgcagaacacgggcctgtgcgtggtggccgacaagctcaac
ttcatccgctacctgtcgcatttccgctgcgtgcacagaggagcggccttcgccaagatg
aggaccacttcggttcgtaagctgctgcctgagtcctggggcttcatgtgtcccgtccac
actccagacggagagccttgcggactcatgaaccacatgactgccagctgtgagatagtg
gcgcagaccttgtccaccgtatcactacctggtctactctgttccctaggcgttactgca
gtggatggaactcctggccaagccttttctgactgctaccccgtggtcctggacggagct
gtcgtaggctgggtggagactgaattagcctctactgtggttgactctctgcgcaggttt
aaggtgctgagagagaagaggatccctccatggactgagattgttctggtacccaaaacg
ggcaaagccagcttgtaccccggcctgttcctcttcacaacgccctgtcggatggtgcgg
cctgtacgaaatttagctcacggacagcaggagatgattggcacctttgaacagctttac
atcaatgtgggcatcttggagaatgagatcgagccgggtgtgacgacacaccaggagctc
ttccctcacagtatgctgagcgtggtggccaacttcattccctactcagaccacaatcag
agtcctaggaacatgtaccagtgtcagatgggtaagcagaccatgggtttccccctgcac
tcgttcatggatcgctcagataacaagctgtaccggctccagaccccacagagtccactg
gtcaggccctacatgtacgaccactacaacctggacaactaccccagcggcaccaacgcc
atcgtggcagtcgtatcctacacaggctacgatatggaagacgcaatgattgtgaacaag
tcatcgtgggagaggggcttcgctcatggatccatctacaagacggagctggtggacctg
gcggataaagtgaggggagatgacagcgtggtgttcggggccaagccggacgaccccaag
gtgatggacaaactggatgcggacgggctgcctcacattggatccacacttaaatacgga
gatccgttctacggctacatcaacctcaacaccggccagaccttcgtcaccttctacaag
agccaagaagcctgcgttgttgacaacataaaggtctgcagtaacgacaccggctcagga
cggttcaaacgcgtctgcatcactgtaagaattccccgtaacccgaccatcggtgacaag
ttcgccagccgccacggccagaaaggcatcctgagccgcctgtggcccgcagaggacatg
cccttcacagagagtggcatgagcccagacatcctgttcaacccccacggcttcccctct
cgtatgaccatcgggatgctgatcgagagcatggcgggaaagtctggcgccctgcacggc
ctgagccacgacgccacgcccttcaccttctccgaggaggacgcggcgctcgagtacttt
ggtaaaatgctccgggccggcggctacaactactacggcacggagcggctctacagcggg
ctgagcggcctggagctagaggctgacatcttcataggcgtcgtctattaccagaggcta
cgtcacatggtctccgacaagttccaggtgaggacgacgggagcgagggacaaggtgacc
aaccagccggtgggagggaggaacatccagggaggcatccgtttcggggagatggagcga
gacgccctgctggcccacggctcttccttcctgcttcacgaccgcctcttcaactgctcg
gaccgctccgtggctcaggtgtgcgtggactgcggcagcctgatctctcctcttttagag
aagccgccgccttactggtcggccatgctccaccgcaagactgtctgcaccctgtgcggc
aaaagtgactccatcgactccgtgtctgtcccttacgtgttccgttattttgtagccgag
ctcgcagccatgaacatcaaagtcaaattagacgttaagtga
DBGET
integrated database retrieval system
