Scomber scombrus (Atlantic mackerel): 133991760
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Entry
133991760 CDS
T10651
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133991760 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
133991760 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133991760 (nfkb2)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
133991760 (nfkb2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
133991760
NCBI-ProteinID:
XP_062286285
LinkDB
All DBs
Position
12:complement(31056142..31084158)
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AA seq
894 aa
AA seq
DB search
MSEAQFINVYDSELQLHLMPYEYIPPVDIKTEPYIPETAHGPYIQIIEEPKQRGFRFRYE
CEGPSHGGLPGASSEKNRRTYPTVKINNYVGNARVEVQLVTHTEPPQVHAHSLVGRHCTE
KGTCTLDVGPNDLTASFSNLGILHVTKKGVVEILCRRLKEERKRQKGPHSALSEAEEASL
LKEAKALGKVMDLNIVRLKFTAFLQDSNGGFTRALKPVVSNPIYDSKSPNASNLKISRMD
KTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDEEGGWEAFGDFSPTDVHKQYAIVFKTPA
YHSAEIERPVTVFLQLKRKKAGDRSDPKQFTYIPQVQDKEEVMRKKQKPLPHYEPWRGGG
GGGGRGGGAGSFGGGGGGGFQFNQQMNGAAGGTGGFFSGSFTGFGGGGAQMSNSTQAQQQ
TGQTGQTGQTGQTGQTGQNGSPLQQQLFQIAAALHSRASQSARQTAAALLQYCSSGDARV
LLVIQRHLVGIQDTNGDTPLHLAVIHQQAAVIQQLIHILLSSQQQAFINNPNHLRQTPLH
LAVITRQVKVVEALLRAGADPSLLDKDGRSPIHLAALAGDSATLRLLLAHLGERHAHMVN
STDYHGLQPLHLAVRKDGERCLRLLVEGGAKINAPEQKSGNTALHLAVREHLFKVACTLI
TELKADVNACTFGGNTALHLAASLGSPTLCSMLIAAGADKNLENDEPLFISSSSDDDDDE
DEPIREAASQPINPRKRPAGGHTPLDLARCQKVKNLLNSQSPKSSRHVSKKIRASSEEAE
ASGLDEDTLSRLVEVLSVEDVPWKKLAEKLGMLTLTHLYQDSPTPCRHLLQHYKLGGGPV
DGLVEALHSLGLKEGVRLLRNTERQDDKHSTDAHVDSGFGSQPMEEEEPAVANQ
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagctcagttcatcaacgtctacgacagcgagctacagctccatctgatgccg
tatgaatacattcctcctgttgacataaagactgaaccttatatacctgagacagctcac
ggtccgtacattcaaatcatcgaggagcccaaacagaggggatttcgtttccgttatgag
tgcgagggtccgtcccacggtgggctgccaggggcctccagcgagaagaacaggaggacc
tacccaaccgtgaagattaataactatgtgggtaacgcccgtgtggaggtgcagctggtg
acgcacaccgaacccccccaggtccacgctcacagtctggtggggcgacactgcaccgag
aagggaacctgcacgctggacgtcggccccaacgacctcaccgcctcgttcagtaatctg
ggaattcttcacgttaccaagaaaggagtcgttgagattctgtgtagaagactgaaagaa
gagaggaagagacagaaagggcctcacagtgctctctcagaggccgaggaggcgtccctg
ctgaaggaggccaaggctttggggaaggtgatggatctgaacatcgtcaggttaaagttc
acagctttccttcaggacagtaacggaggtttcaccagagctctgaaaccggtggtgtcc
aacccgatctacgacagcaagtctccaaacgcttccaatctgaaaatctctcggatggat
aaaacgtgcggctcggttctgggaggagacgagatcttcctgctctgtgacaaagtccag
aaagatgacatagagatccgtttctacgaggaggacgaggagggcggctgggaggcgttc
ggagacttctctcccactgacgttcataaacagtacgccatcgtgttcaaaacgccggcc
tatcacagcgcagagatcgagcgtcccgtcactgtgttcctgcagctgaagaggaagaag
gccggcgaccgcagcgaccccaaacagttcacctacatcccacaggtccaagacaaagag
gaggtgatgaggaagaagcagaagccactgcctcactatgagccctggagaggaggagga
ggaggaggaggaagaggaggaggagctgggagctttggaggaggaggaggaggagggttc
cagttcaaccagcagatgaacggagcagcaggaggaacaggaggcttcttttcaggaagc
ttcactggtttcggtggaggaggagcccagatgtcaaactccacccaagctcagcaacag
acgggtcagacgggacagacgggacagacgggtcagacgggtcagacgggtcagaatggt
tcaccactacaacagcagctttttcagatagctgcagctcttcacagccgggcctctcag
agcgccaggcagacggctgcagctctgttgcagtactgcagcagcggagacgctcgagtt
ctgctcgtcatccagagacatctggtcggcatccaggacaccaacggagacacaccttta
cacctcgccgtcatccaccagcaggccgctgtgatccagcagctgatccacatcctgctg
agcagccagcagcaagccttcatcaacaaccccaaccacctgagacagactcctctccac
ctggctgtgatcacccggcaggtgaaggtggtggaggcgttgctgagggcgggcgccgac
cctagcctgctggacaaagatggccgcagccccatccacctggcggcgctggcgggtgac
agcgctacgctccgcctgctgctggctcacctgggagaacgccacgcccacatggtgaac
agcaccgactaccacggtctccagccgctccacctggccgtgaggaaggacggcgagcgc
tgcctccgcctgctggtggagggcggagccaagatcaacgcacctgagcagaagagcggg
aacactgcgctccacctggccgtcagagaacacctgttcaaggtggcctgcaccctgatc
acagagttgaaggccgacgtgaacgcgtgcacgtttggaggaaacacagcgctgcacctc
gctgccagtctgggctcgccgaccctctgctccatgctgatcgctgcaggtgctgataag
aacctggagaacgacgagccgctcttcatcagctcctcctcagacgacgatgatgatgag
gatgaaccaatcagagaagccgcctcacagccaatcaaccctcgtaagagacctgcgggc
ggacacacacctctggacctcgccaggtgtcagaaggtcaagaatctgctgaactcacag
agtccgaaatcaagtcgtcacgtcagtaagaagatcagagccagcagtgaagaggcggag
gcgtcgggtctggacgaggacactctgtcccggctggtggaggttctgagtgtggaagat
gttccctggaagaaactggcagagaaactgggaatgttgacgttgactcacctttaccag
gacagtccaacgccctgcagacacctgctgcagcactacaagttgggtggaggtccagtt
gacggtctggttgaagctcttcactctctcggtctgaaagaaggagtcagactgctgaga
aacactgagagacaagatgataaacacagcacagacgctcacgtcgacagcggcttcggc
agccagccaatggaagaggaggagccagccgtggccaatcagtga
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