Scomber scombrus (Atlantic mackerel): 133991941
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Entry
133991941 CDS
T10651
Name
(RefSeq) PDZ and LIM domain protein 3-like
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133991941
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
133991941
Domain-containing proteins not elsewhere classified [BR:
ssco04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
133991941
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
P30
Motif
Other DBs
NCBI-GeneID:
133991941
NCBI-ProteinID:
XP_062286544
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All DBs
Position
2:26148089..26161859
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AA seq
315 aa
AA seq
DB search
MPLNVVLDGPAPWGFRLAGGKDFSQPLTISRITPGSKASLANLCAGDLILAIEGVPAADL
LHCEAQNKIKESTSRLCLTVERNQTSLWSPRVVEEGKAHPYKINLEAEQQEFKPIGTAHN
RKAQPFIAAANLDDNRQVVSTAYNTPIGLYSSGNIQDAMEGQIRGIVHPKPESPRTLTNI
EESDVYRMLLKDQEEPQEPRQSGSFKALQDFIDSDGTRPIVTRTVKAPTTKPTTPTGNLQ
KLPVCDKCGNGIVGTVVKARDKYRHPGCFVCSDCDVNLKQKGYFFVEGQLYCETHARART
RPPEGHDLITTYRSA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgccactcaatgtcgtgttggacggcccggccccctgggggtttcggctggcaggaggg
aaggacttcagccagcccctgacaatctccaggatcactccgggcagtaaggcctccctt
gccaacttgtgcgctggtgacctcatcctggccatcgagggagtcccagctgcagacctg
ctgcactgtgaagcccaaaacaagataaaggaatccaccagtcggctctgtctgacggtt
gaaaggaatcagacaagcctgtggtcaccccgtgtggtggaggagggtaaagctcaccca
tataaaatcaacttggaagcagagcagcaggagttcaaacctattggcactgctcacaat
cgcaaagctcagccgttcattgcagcagccaacctcgatgacaatcgtcaggtggtcagt
acagcctacaacactcccatagggctctactcctcaggcaacatccaggatgccatggag
ggccagatccgtggcattgtccaccccaagcctgagagccccaggactttaaccaacatt
gaagaatctgatgtgtaccggatgttactgaaagaccaggaggagccccaagagcctcgg
cagtctggctctttcaaagccctacaggactttattgatagtgatggcactcgtcccatt
gtgaccaggacagtaaaagccccgacaaccaaacctactacacccacaggaaacctgcag
aaactgcctgtctgcgacaagtgtgggaatgggattgtcgggacagtggtaaaagcacga
gataaatatcgtcaccctggttgctttgtgtgctctgactgcgacgtcaacctcaaacag
aaaggctatttcttcgtggagggtcagctgtactgtgagactcatgctcgtgccagaaca
agaccaccggagggacacgatcttatcaccacttatcgttctgcataa
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