Scomber scombrus (Atlantic mackerel): 133992000
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Entry
133992000 CDS
T10651
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133992000 (ddx43)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133992000 (ddx43)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133992000 (ddx43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
KH_PNO1_2nd
ResIII
CMS1
KH-I_KHDC4-BBP
KH_2
SNF2-rel_dom
KH_KhpA-B
Motif
Other DBs
NCBI-GeneID:
133992000
NCBI-ProteinID:
XP_062286621
LinkDB
All DBs
Position
12:complement(22767100..22780515)
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AA seq
700 aa
AA seq
DB search
MSDWEDEYDGGVAIPKKTATNTAPTEWKSPCDERRPESVSFGVRNGARFGGSREWRADRS
SSDGGGWGTDYNNPRGGGGGGGGSRQWNFGDEKSEASPHVTIKVENGSVGRIIGRGGAKI
RELEESTGARIKINKGDYEGEVVILGTPEAQQKAKEMIEELVADGNSRFRNGPGRGGDYG
GGGDGGVKCSSVWSNAELQAADTAPAPSSIDWNTIRENRGKYEELKWKDLPPMKKKFYTE
SESVSQLTAEEVSEWRKENNNIIVDDLKEEGEKRPIPYPCRTFLEAFELYPEIMENIDRV
GFVKPTPIQSQGWPVLLIGEDLIAIAQTGTGKTLAYLLPGFIHMDGQPVPRAQQGGPGML
VLTPTRELALQIETECKKYRYKGYKSICIYGGGDRRAQIKLVKSGVDIVIATPGRLNDLQ
MNELISLHSITYLVLDEADRMLDMGFEPQIMKILLDIRPDRQTVMTSATWPTGVRRLAKS
YLKNPMMVYVGTLDLAAVNTVEQTVLIVHEEEKKSYVFDFVRNMLPHEKVLIFVGKKLMA
DDLSSDMCLQGLAVQSLHGDREQCDREEALKDFKESRVRILIATDLASRGLDVHDITHVF
NFDFPRNIEEYVHRVGRTGRAGRSGAAVTLVTRENWRMAPELIPILERAGQEVPDELVLM
AERYEKHKREKDMCNPRGGQGQGGGGRRDGGRDRSQNWGF
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactgggaggatgagtacgacggcggtgttgctatcccgaagaagactgccact
aacacggcaccgactgagtggaaatcaccgtgtgacgaacgtcgaccggaaagtgtatca
ttcggtgtaagaaacggagcccggtttggaggctccagggagtggagagctgaccggagc
agcagcgacggcggtggctggggaaccgactacaacaacccaagaggtggaggtggaggt
ggaggtggaagccgccaatggaactttggcgatgagaaatcagaggcttccccacatgtg
actattaaagtggaaaatggttcggttggaaggataataggtcgaggtggagccaaaatc
cgagaacttgaagagagcactggagcaagaatcaagataaacaagggggactatgaaggt
gaggtggtcatcttggggacccctgaagcccagcagaaggctaaggagatgattgaagaa
ttggtagcagacggcaactcccgattccgcaacggtcctggtagaggtggagactatgga
ggtggaggcgatggaggagtaaagtgtagctctgtctggtctaatgcagaattacaggct
gcagacaccgccccggccccctcatccatagactggaacaccatccgggagaaccgcgga
aagtatgaagagctcaagtggaaggatctcccacccatgaagaagaaattttacactgag
tcagagagtgtatcccagctcacagcagaagaagtcagtgaatggaggaaggagaataac
aatattattgtggatgacctgaaggaggaaggggagaagcggcccattccctatccctgc
cgcacctttttggaggcctttgagctttatccagagatcatggagaacattgaccgggtt
ggcttcgtcaaaccaacccccatccagtctcagggatggcctgtgctgctgatcggggag
gatctgatagccattgctcagacaggaacaggaaaaaccttggcctacctgctgcctggg
ttcatccacatggatggacagcctgtacctagagctcagcagggtggcccaggcatgttg
gtactgactccaaccagagagctggccctgcaaattgaaactgaatgcaaaaagtaccgc
tataagggatacaaaagtatctgtatctatggtggaggggacaggagagcccagatcaaa
ctggtaaagagcggggtggacatagtgatcgccacgccaggccgactaaatgatctacag
atgaatgagctaatcagtcttcactccatcacttacttggtgctggatgaggcagaccga
atgctggatatgggctttgaaccccaaataatgaagattctcctggacatccgcccagac
cgacagactgtcatgaccagtgccacctggcccactggtgtgagacgattggccaaatcc
tacctaaagaatcccatgatggtttatgtgggcaccctggacttggcagcagttaacacg
gtggagcagacagtgttgattgtacatgaagaggagaaaaagtcctatgtgtttgacttc
gtcagaaacatgctgccacacgaaaaagttctcatctttgttggcaagaagctcatggct
gatgacctctccagtgacatgtgtctacagggtctggctgtacagagtctacatggagac
cgtgagcagtgtgaccgtgaagaagctctcaaggactttaaagagagtcgagttcgtatc
ctgattgctacagacttggcatctcgagggttggatgtccatgacatcacacatgtcttc
aactttgatttcccacgaaacatagaggagtatgttcatcgtgtgggccgcactggcaga
gcaggacgttcaggtgctgctgttaccctggtaacgagagaaaactggaggatggcacct
gagctgattcccatcctggaacgagcaggacaggaggttcctgatgagctggtgcttatg
gcagaaagatacgagaagcacaagagggagaaggacatgtgcaatccaaggggagggcag
gggcaaggtggaggggggcggagggatggaggcagggatcgaagccaaaattggggattc
taa
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