Scomber scombrus (Atlantic mackerel): 133992016
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Entry
133992016 CDS
T10651
Name
(RefSeq) ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133992016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133992016
03009 Ribosome biogenesis [BR:
ssco03009
]
133992016
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133992016
Spliceosome [BR:
ssco03041
]
Complex A
U2 snRNP components
U2 related factors
133992016
Complex B
133992016
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
133992016
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
90S particles
Helicases
133992016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
AAA_25
Cas3-like_C_2
Flavi_DEAD
AAA_29
Atrophin-1
AAA_7
nSTAND3
T2SSE
Motif
Other DBs
NCBI-GeneID:
133992016
NCBI-ProteinID:
XP_062286648
LinkDB
All DBs
Position
2:21276096..21284101
Genome browser
AA seq
762 aa
AA seq
DB search
MSKRHRLDLGDDYSSTKKRSEGRDRDRDRDREDRSRDRDRDRDRDRDRDRDRDPKSSSVP
SNSTPVVVGLPPLKQMAAQQQINPFTNLPHTPRFYEILKKRLQLPVWEYKESFNDIITRQ
QSFVLVGETGSGKTTQIPQWCVELVRGLPGPKRAVACTQPRRVAAMSVAQRVADEMDVML
GQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILM
GVLKEVVRQRPDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLE
AAIRTVIQIHMCEEDEGDCLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLP
PQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRV
ESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQ
LKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAK
MVIASCEYNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHA
FKQNHESNQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRAL
CTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDI
KPEWLVKIAPQYYEMGNFPQCEAKRQLERIIAKLESKEYSQY
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaagacatcgtctggatttgggcgatgactactcctcgactaagaagaggtct
gaagggagagatagggaccgtgacagagaccgtgaggatcgctcccgggacagagaccga
gatcgcgatcgggacagagacagagaccgggacagagacccaaagtcatctagcgtgcca
tctaacagcacaccagttgtggtgggcttaccgcccctcaagcagatggcggcgcagcag
cagatcaacccattcaccaacctgccgcacacgccgcgcttctatgagatcctgaagaag
aggttacagctaccagtttgggaatacaaggaaagcttcaatgatatcatcacacgtcaa
cagagctttgtcctcgtcggagagactggctctgggaagacaacacagatcccacagtgg
tgtgtggaattggtgaggggcttgcctggtcctaagcgggcagtggcttgtactcagccc
aggagagtggcagctatgagtgtcgctcaaagagtggcagacgaaatggacgtcatgctt
ggtcaggaagtcggctattccattcgatttgaggactgtagctctgccaagactatactg
aagtacatgacagacggtatgttgcttagagaggctatgaacgacccgctgctggaacga
tatggtgtgataattctggacgaggcccacgagcgaacactggccacagacatcctgatg
ggagtactgaaggaggtggtgcgacaaagaccagatctgaaggtgattgtcatgagtgcc
acgctagatgccgggaagtttcaggtgtactttgacaactgtcctctgctgactattcct
ggacgtacgcatcctgtggagatcttctacactcctgagccagagcgagactaccttgaa
gcagcaatccgcacagtcatccagatccatatgtgtgaggaagatgaaggtgactgcctt
ctctttctcactggtcaagaggaaattgatgaggcctgcaaacggatcaagcgtgaggtt
gatgaccttggacctgaagttggagacattaaaatcattccactgtattcaacattgcca
ccacagcagcagcaaaggatctttgagcctcctcctccaaggaaacccaatggtgcaata
ggaagaaaggttgtcgtgtcgacaaacattgccgagacctctctgacaattgatggtgtg
gtgtttgtcatcgatcctggattcgctaaacaaaaggtgtacaatcctcgtatcagagtt
gagtcattgctcgtcacggccatcagtaaagcttctgcccagcagagggcagggcgagct
ggcagaacacgtccagggaaatgtttccgtctctacacagagaaagcatacaaaacagag
atgcaggataacacataccctgagattctgcggtccaacttgggatctgttgtgctgcag
ttgaaaaaactgggtatcgatgaccttgtgcactttgacttcatggatccaccagctcct
gagactttgatgagggccctcgagctgctgaactacctggcagctctcaacgatgatggt
gacctgacggagctgggctccatgatggctgaatttcctttggacccccagctggcgaag
atggttattgctagctgcgagtacaactgctctaacgagatcctttccattactgccatg
ttgtcagtcccacagtgttttgtccgccccacggaggctaagaaggcagcagacgagtcc
aagatgaggtttgctcacatcgacggagaccacttgacgctgctcaacgtctaccacgcc
ttcaaacaaaaccacgagtctaaccagtggtgctatgacaactttgtcaactaccggtca
ctgatgtctgccgacaacgtgcggcagcagctgtccaggatcatggaccgcttcaacctg
ccccgccgaagcactgagtttaccagcagagattactacatcaacatccgcagagcgctc
tgcaccggcttcttcatgcaggtggctcatttggagcgcacgggtcattacctcacagtc
aaagacaaccaagtggtccaactgcacccgtctacagtcctggaccacaaacctgaatgg
gtgctgtacaatgaatttgtcctcaccaccaagaactacatacgcacttgcacagacatc
aaaccagagtggttggtgaagattgcaccccagtactatgaaatgggtaacttcccacaa
tgtgaagctaaaagacagctggagcgaatcattgccaaactagagagcaaggagtattcc
cagtactga
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