Scomber scombrus (Atlantic mackerel): 133992107
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Entry
133992107 CDS
T10651
Symbol
psda
Name
(RefSeq) LOW QUALITY PROTEIN: PH and SEC7 domain-containing protein 1
KO
K12494
PH and SEC7 domain-containing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133992107 (psda)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133992107 (psda)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Arf GTPases and associated proteins
Arf associated proteins
133992107 (psda)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
PH_9
PH
Motif
Other DBs
NCBI-GeneID:
133992107
NCBI-ProteinID:
XP_062286780
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All DBs
Position
12:complement(30970473..31019021)
Genome browser
AA seq
1593 aa
AA seq
DB search
MSQAGKVLHLYVEVRSVPEEEGKRRAADGSAHLMLQCPDVLPHSPDLPPVIKHLTGVGSH
SLPPPKSSSRHPASFQLQNPDAADSPPHFHRPDASRDSFGELLQVLVPAAGSPGPRGSLN
WTPSSDMDPYQKRGLPAPSGRLTVPSTPTGTRRSYEVLGLGGEEGKTSVVKFGYIEKSNV
HSGRRSSVSELGGPLLPPHLRKRLSDPVWCDGQQRQPEPYSRPPYPSQSQSPQGSPYLPR
PALDAIARDATYRALEEFGSPELRRRFGGPENSSPTLPRHYHYPRCRSWAGSPVLPRGTF
TLPSRVQLLDLDGGSCHGSLNGLPRSPASDELCAHTGRSAAAAAVAAAPHCQGSPRSRQR
PWLRDESLRPSSKFHPPLPAGRPTDIQHEIPTSSQPGTGSRQRSVSSDRYNANHSAVTNT
HCSTNSNSAVSSRTQSRPPSCSRASSRSTSPSHAEVACKLAVEAAGSRSTSPSHAEVACK
LAVEAAKLSSIFAERRTPSPTPESLMGGSFLRESQPYATLQGRLSPEVLEADQWNQQNQR
EERNQWNPQNQWNQQNQRQRTDKPAAQTRLGQVSPLSAARLHKSVPSQAPVSDHQHQQSP
SPNKDPSSLHRYQPPQFTGDRTTRVERRQYELLSDTSPNNSPEPCRRLQERRETGEDPGV
YGPSREEHLRTDGGDVGGKTSVQSYHSDEVQDHSGAGGSSQSSSGVTGSMSPETSSQSSH
DTADTGMQSDGSAATPTSRSQKIARAKWDFLFGEPPENRCNKDAPPSPSPTPPPSLHLKP
ANQRRERGLSHHQVRQIEVELVTSEPRGSAPKTGIIRRSVKYSETDLDAVPLRCYRETDL
DEVMRAEAEAADEVEADCAFGSNRSVLLNSCFVTVDADLKKLLGKEEEEEEEEEEGVVSW
ASVRMQGDRQRQRATEEEEVFSLLLKRPSEVSSDGLKSPLSVGPPLGPPRRPSDSNLDSF
SRHFESIMESHRAKGTSYSSLDSVDLLTSGSTSVFTFDLPTLTPEIQSQICESAKQILDL
SFAPLARPPPPSETSRSEVTLSALGAGLKGGGRRSGLKDGFRKASSAPSLHNRERALSRP
PELLQPQADVAERLALGDEALANALANGTKADLQAARRLAARLYGLEGFRKSDVARHLGK
NNEFSQLVAEEYLSNFNFSSLTIDQALRKFLGQFALMGETQERERILAHFSRRYMQSNPE
SETTEDSVHTLTCAIMLLNSDLHGNNVGKRMSSSQFISNLEGLNDGKDFPKDLLKTLYSS
IKNEKLQWTIDEEELRKSMSELADVRTDSASHTMKRLTGGNLLVGVAQQADGELYKNGFL
VRKVHADPDGKRTPRGKRGWKSFYAMLKGLVLYLQKDEYRADRELSEEDVKNAVSIHHSL
AMRAADYRKRPNVFYLRTADWRVFLFQAPNAEQMQSWITRINVVAAMFSAPPFPAAIGSQ
KRFSRPLLPGSNTKLSQDEQLKSHENRFRAVSSELAELAAAPDRKVKGRELEEQKLRQEY
LEFEKTRYGTYAMLLRAKVASGDDELSAFESRLFEDGGLQRAHSSPTLPLDAGGEKTRGA
KTTKSLKETTRSDRDGNKKKNGNKRQDEAPQSC
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaggcaggtaaagttctgcacctgtacgtggaggtgaggtccgtcccagaggaa
gaagggaagagaagagcagctgatggatctgctcacctgatgcttcagtgcccagatgtc
ctccctcacagtcccgaccttcccccagttataaagcacctaacgggggtcgggagccac
agcttacctcccccaaaatcctcttctaggcaccctgccagcttccagctccagaacccc
gatgctgcggactctcccccccacttccaccggccggacgcatcgcgggacagttttggt
gaactcctgcaggtccttgtacctgcagccggttctcctggcccccgtggctcgctgaac
tggaccccttcctctgacatggatccttaccagaagagggggcttcctgccccgtctggt
cggctgaccgtaccctccactcctaccggcacccgcaggtcctatgaggtcctggggttg
gggggcgaggaggggaagacctctgtggtgaagttcggctacatcgagaaatctaacgtt
cacagcggccgccgttcctctgtgagcgagctcggcggtccgctgctgcccccccaccta
cgcaagaggctgagtgacccggtgtggtgcgatggtcagcagaggcagcccgaaccttat
tccagacccccctacccgtctcagagccagtccccacagggctcgccttacctgccgagg
ccggctctagatgcaatagccagagatgccacctacagggctttggaggaatttggatcc
ccggaacttaggcgccggtttggaggtccagagaacagcagcccgaccctgccgcggcac
taccactaccctcgctgcaggtcctgggcggggtcgccggtcctgccccgtggcaccttc
accctgccgtccagggttcagctcctggacctggacgggggaagctgtcacggttcactg
aacggattacccagaagccccgcctctgacgagctgtgtgcccacacgggccgctcggcc
gcagcggccgcagtggccgcagcgccgcactgccaaggctcgccccggagccggcagagg
ccgtggctcagggacgagagcctcaggccgtccagcaaatttcacccccctttacccgct
gggagacccacagacatccagcacgagatccccaccagcagccagcccgggaccgggagc
aggcagcgcagtgttagcagtgataggtataatgctaatcacagtgctgtaactaataca
cactgcagtactaacagtaactctgcagtatccagcaggactcagtccagacctcccagc
tgcagcagagccagcagcaggagcacctccccgtctcatgccgaggtggcctgtaagctc
gcggtggaagcggcaggcagcaggagcacctccccgtctcatgccgaggtggcctgtaag
ctcgcggtagaagcggccaaactgtcctccatcttcgcagagagacggactccttctcca
acaccagagtccctgatgggggggtcattccttagggagtcccagccgtacgctacgctt
caggggcgactttcccctgaagttctggaggcggaccagtggaaccagcagaaccagcgg
gaagagcggaaccagtggaacccgcagaatcagtggaaccagcagaaccagcgacagaga
acagacaaaccagcagctcaaacccgcctgggacaagtctcccctctctctgcagccagg
ttgcacaagtcagtcccctctcaggcaccggtctcagaccatcaacaccaacagagtccg
tcccctaataaggacccgtcttccctgcaccgttaccagccgcctcagttcaccggagac
cggacgacccgtgtggagcggaggcagtatgagctcctctctgatacatcgcctaacaac
agccctgaaccctgcaggagactgcaggagcggagggagaccggggaagaccccggagtc
tacggcccgagcagagaggagcacctcaggacggacggaggagacgtcggaggaaagacg
tcggtgcagagttaccatagcgacgaggttcaggaccacagcggggccggcggttcctct
cagagctccagcggagtgacgggcagcatgtcccccgaaacctccagccagtccagccac
gatacggccgacaccgggatgcagtcggacggctcggcagcgacgccgacgtcaagatcg
cagaaaatagcccgagcgaagtgggacttcctgttcggagagccaccggagaaccgctgc
aataaagacgcccccccttcacccagccccacccctcccccctcccttcatctgaagcca
gccaatcagaggagggagcggggtctgtcccatcaccaggtgcggcagatcgaggtggag
ctggtgacctctgaaccccgaggctccgcccccaagactggcatcatccgccgctccgtc
aaatactccgaaaccgacctggacgccgttccgctgcgctgttaccgggagacggacctg
gacgaggtgatgcgggcggaggcggaggcagctgacgaggtcgaggcagactgtgctttt
gggagtaatcgcagcgtgttgttaaactcgtgcttcgttaccgtcgacgctgacctgaag
aagctcctaggaaaagaggaggaggaggaggaggaggaggaggaaggagtggtgagttgg
gccagcgttcggatgcaaggagacagacagagacagagagccactgaggaagaggaagtg
ttcagtctgctgctgaagaggccgtcggaagtttcctctgatggactgaagtctccgctg
tcggtcggcccccccctcggccccccccgccggccctccgacagcaacctggactccttc
agccgacactttgagagcatcatggagtctcaccgggccaaaggaacttcctactccagc
ctggactctgttgacctgctgacctccggatccacatcggtgttcaccttcgacctccca
accctcacacctgagatacagagtcagatctgtgaaagtgccaaacagatcttggatctg
agcttcgcccccctcgctcggcccccccccccctcggagacgtcgcgctcagaagtgacg
ctcagtgcgttgggggcggggcttaaggggggggggcgccgctccggcctcaaagatggc
ttccgtaaggcgagctcggcgccgtcgctgcacaacagggagcgggcgctgagtcgcccc
cccgagctgctgcagcctcaggccgacgtagcggagcgtctggcgctgggcgatgaagcg
ctagctaacgcgctagctaacggaacgaaggccgacctgcaggccgctcgccgcctcgcc
gctcggctctacggcctcgaaggcttcaggaagtctgacgtggctcgccacctcggcaag
aataacgagttcagtcagctggtcgcagaagaatatctcagcaacttcaacttctccagt
ctgaccatcgaccaggcgctcaggaagtttttgggtcagtttgctctgatgggagaaact
caggagagagaaagaatcctggctcacttctccagaagatacatgcagagtaatcctgag
agtgagacaactgaagacagcgtccacactctgacgtgtgctatcatgctgttgaactcg
gaccttcatggaaacaacgtggggaagaggatgtccagcagtcagttcatctctaacctg
gaaggactcaatgatggaaaagacttcccgaaagatctgttgaagacgctctacagctcg
atcaagaacgagaagcttcagtggacgattgatgaagaggagttgaggaagtcgatgtcg
gagctagcagacgttcggactgactccgcctctcacaccatgaagcgtctcactggagga
aacctgctggtgggcgtcgcccagcaggccgacggcgagctctataagaacggcttcctg
gtccgcaaggtccacgccgaccctgatggaaagagaacaccgcgagggaagagaggatgg
aagtctttctacgcaatgctgaagggactcgtgctgtacctgcagaaggatgagtaccgt
gcggaccgcgagctgtcggaggaagacgtgaagaacgccgtttccatccatcactcgctc
gctatgagagccgccgactacagaaagagacccaacgtgttctacctgagaaccgctgac
tggagagtgttcctgttccaggctccgaacgcggagcagatgcagtcgtggatcactcgg
atcaacgtggtggcggccatgttttcggcgcctccgttcccggcggcgatcggctctcag
aagcgtttcagccggccgctgctgccgggctccaacaccaaactgtcccaggacgagcag
ctcaaatcacacgagaaccgtttccgagccgtttcctccgaactcgccgagctcgccgcc
gcccccgacaggaaggtcaaaggtcgcgagctggaggagcagaaactgcgacaggagtac
ctggagttcgagaaaacgcggtacgggacgtacgccatgctgctgagggccaaagtggcg
agcggcgacgacgagctgtcggccttcgagtcgcggttgtttgaggacggcggactgcag
agggcgcactcgagcccgacactgccgctggacgccggcggggagaagacgcgcggcgcc
aagacgactaaaagcctcaaggagacgacgaggagtgacagagacggaaacaagaagaag
aacggaaacaaacggcaggacgaagcgccgcagagctgctga
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