Scomber scombrus (Atlantic mackerel): 133992259
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Entry
133992259 CDS
T10651
Symbol
si:busm1-71b9.3
Name
(RefSeq) B-cadherin
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04371
Apelin signaling pathway
ssco04514
Cell adhesion molecules
ssco04520
Adherens junction
ssco05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
133992259 (si:busm1-71b9.3)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
133992259 (si:busm1-71b9.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133992259 (si:busm1-71b9.3)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133992259 (si:busm1-71b9.3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133992259 (si:busm1-71b9.3)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133992259 (si:busm1-71b9.3)
04090 CD molecules [BR:
ssco04090
]
133992259 (si:busm1-71b9.3)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
133992259 (si:busm1-71b9.3)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Major cadherins
133992259 (si:busm1-71b9.3)
CD molecules [BR:
ssco04090
]
Proteins
133992259 (si:busm1-71b9.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_pro
BACON_2
Motif
Other DBs
NCBI-GeneID:
133992259
NCBI-ProteinID:
XP_062286962
LinkDB
All DBs
Position
12:complement(3033597..3047488)
Genome browser
AA seq
975 aa
AA seq
DB search
MGRARFTVLGILIIIFQTLTLVSTEDPKCQPGFQSELLSFTVTRKNLRAGTRLGKVGFTD
CTDRTRFLFNSDDSRFMVQTDGTLMVKRHVVLHDGHIEFFIHSWDSQGRKMTVPVMVVDH
GHHHGNHHGNHHQNEEHQHRDHKHHNHQQHHSEVDSAKTTESATDPVVPVLHFPKSGEGL
RRKKREWVIPTINVPENERGPYPLKVTQIRSNADKLYNMYYGITGPGADQEPVNLFTIDG
HTGFLYVTQPLDRERQAKYMFQAHAVAVGLGNAEEPIEIIVNVIDQNDNRPLFDKDTYLG
EVAEASKIGSDVITVTAIDLDQQNHDNSDIRYRIMSQNPKLPSDAFVINPLTGAISLNAA
GLDREQYPKFTLEVEAADMRGEGLSAGATVILTVTDRIDNNNPDSQPSSAADPVVPVLHF
PKSSEGLRRRKREWVIPDINVPENQRGPYPLKVSQIRSNEDKIKKIYYGITGPGADQEPV
NLFTMDRLTGILYVTQPLDRENQAKYMFQAHAVAEGAGNAEEPIEIDVNVIDQNDNKPLF
EKDTYLGEVAEASKIGSDVITVTAIDLDQQNHDNSDIRYRIMSQDPKLPSDSLFIANPLT
GAIRVNAGGLDREKYPKYTLEVQAADMKGEGLSTTTKVILTVTDSNDNAPVFTQPSYEVT
VAKNNVGAVVLTMSVTDGDEPHSPAWNAKFRIVDGDPGNIFSVSTGVNKHEGILTTVKGA
DFERSGKHTLMIAVENEVPFAFSLPTATATVVVTVEYINEVPFFDPVEKLVSKPEDLAID
SEVVRYTANDPDIARKQTVSYKVVSDPAGWLTVNKDTGVITVKSAMDRESHFVKDNKYTA
LIGAYDNDEVPATGTGTLIIQLEDVNDNAPSIVEREFTVCNKEGTPQLLSVIDKDGPGFT
APYSVSLQGMSKAHWTARMNDSKTGIILNMATELPIGVYPVVLRVSDNEGMEQDSSLMIT
VCNCKQGRCQGFRAP
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggggagagctcggttcacggttttggggattttaatcatcatttttcagactttgact
ttagtgtctactgaggatccaaaatgtcaacctggattccagtcagagttgttgagtttc
acagtgaccagaaagaacctaagagcgggcacgaggctgggcaaagtgggcttcactgac
tgcacagaccgcacaagatttcttttcaacagtgatgacagccgcttcatggtacagaca
gacggcacactgatggtgaagagacatgttgttcttcatgatggacacatagaattcttc
atccactcctgggactcacaaggtcgcaagatgacagttcctgtcatggtagtggaccac
gggcatcaccatgggaatcaccatggcaaccatcaccaaaatgaagagcatcaacataga
gaccataaacaccacaaccatcagcaacaccattctgaagtagactctgcaaaaaccaca
gagagtgcaactgatccagtggtgcctgttctgcatttccccaagtctggtgaaggactg
aggaggaagaagagagaatgggttattcctaccatcaatgttcctgagaatgagagggga
ccataccccttaaaagtaactcagatccgatccaatgccgataaactatataacatgtat
tacggcattactggtccaggagctgatcaggagcctgtcaaccttttcaccatagacgga
cacactggttttttgtacgtcacacagccactggacagagaaaggcaggccaagtacatg
tttcaggcacatgctgtggcagtgggtttaggaaatgctgaggagcccattgaaattatc
gtgaatgtaattgaccagaatgacaacagaccactttttgacaaggacacctacttggga
gaagttgctgaggcctcaaaaataggttcagatgtgattacggtcacagccatagatctg
gaccagcaaaaccatgacaactcggatatccgctaccgtattatgagccagaacccaaag
ttgcccagcgatgcgtttgtcatcaacccattgaccggagccatcagcctcaatgctgct
gggctagacagagagcaatacccaaagttcactctggaggtagaggcagctgacatgagg
ggagaagggttgagtgcaggagcaacagtaatcctcactgtcacagatagaatagacaat
aataatccagacagtcagccctcgagcgcagctgatccagtggtgcctgttctgcatttc
cccaagtctagtgaaggactgaggaggaggaagagagaatgggttattcctgacatcaat
gttcctgagaatcagagaggaccataccccttaaaagtatctcagatccgatccaatgaa
gataaaataaagaagatttattacggcattactggtccaggagctgatcaggagcctgtc
aaccttttcaccatggacagactcactggtattctgtacgtcacacagccactggacaga
gaaaaccaggccaagtacatgtttcaggcacatgctgtggcagaaggtgcaggaaatgct
gaggagcccattgaaattgacgtgaatgtaattgaccagaacgacaacaaaccgcttttt
gaaaaggacacctacttgggagaagttgctgaggcctcaaaaataggttcagatgtgatt
acggtcacagccatagatctggaccagcaaaaccatgacaactcggatatccgctaccgt
attatgagccaggacccaaagttgcccagcgactctctgtttatcgccaaccccttgact
ggagccatcagagtcaatgctggtggtctagacagagagaaatacccaaagtacactctg
gaagtacaagcagctgacatgaagggagagggactgagtacaacaacgaaagtaatcctc
actgtgacagatagtaatgacaacgctccagtcttcactcagccctcttatgaggtaaca
gttgcaaaaaataatgtgggtgctgtggtccttaccatgtcagtaacagatggggatgag
ccacattccccagcctggaacgccaagttcaggattgttgatggtgatcctggaaacatt
ttcagtgtgagcacaggagttaacaaacatgaaggaatcctcaccactgtaaagggtgct
gactttgagaggtccggcaaacacactctgatgattgcagtggagaatgaggttcctttt
gctttttcactccctactgccaccgccactgtagtggtgactgtggaatacatcaatgaa
gttccgttctttgatccagtggaaaagcttgtgtctaaaccagaggaccttgccatcgac
agtgaggtggtgcgctacactgctaatgatccggacattgcacgcaaacagacagtctcg
tataaggtagttagtgacccagcgggctggttgactgtgaacaaagacacgggcgtgatt
acagtgaagagcgccatggacagagagtctcactttgtaaaggacaacaaatacacagca
ctcattggtgcatatgacaatgatgaagtcccagccacaggaactggtaccctgatcatc
cagcttgaagatgttaatgacaacgcaccctccattgtagaacgtgaattcactgtgtgt
aacaaggaaggcactcctcagttgctgtcagtaatagataaagacggaccgggcttcact
gctccatacagtgtctctctacagggcatgagtaaggctcactggactgctaggatgaac
gactccaaaacaggcatcatcctgaatatggctactgaactaccaataggagtgtaccct
gtggtcctgagggtttccgacaatgagggcatggagcaggacagcagcttgatgatcact
gtgtgcaactgcaaacaggggcgctgccagggatttcgggccccgtga
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