Scomber scombrus (Atlantic mackerel): 133992306
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Entry
133992306 CDS
T10651
Symbol
pcdh7a
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133992306 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
133992306 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133992306 (pcdh7a)
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133992306 (pcdh7a)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133992306 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
133992306
NCBI-ProteinID:
XP_062287010
LinkDB
All DBs
Position
2:17864066..17902033
Genome browser
AA seq
1374 aa
AA seq
DB search
MQRLGAVHSSAAQALSLVVLVLQLLTQLPGADSALRYRVAEEGPPDVKIGNVAADLGLTA
GTGSGDVTFALESGSEFFKIDNVTGELTTGPRRIDREKLLQCQMIFDENECFLDFEVSVI
GPLQSWVDLFEGRVVITDINDNTPSFPSPVLQLSVEENRPIGTLYLLPTATDRDFGRNGI
DRYELIQDGGAGSSSTRRIAGGNPITRVDGLGDRRGRSGDNGGAARSTVFELQVADIPDG
EKQPQLIVKGTLDREQKDSYELVLRVRDGGNPPRSSQALLRVSITDVNDNSPQFERSTYE
AEMAENAPPGTPVLQVRASDRDIGVNGQVEYVFGAATESVRRLLRLDEATGWLSVLHRID
REEVAQLRFTVMARDRGQPPRTDRTTVVLAVRDENDNVPVVEIRKIGRIPVRDGAALVPE
NVLVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGETALPPLPVDEAFDRNKKKY
FLHTSALLDYEVTKEYSVTIVAVDSGSPSLSSNSSLMVRVVDINDHAPTFAQSVVEVHFA
ENNSPGERVVTVVATDADSGKNAEIAYSLDSVVNGPFYIDADNGDIRATGVLDREQRERY
ELRVIAKDKGTPSLQGSATVVVQVTDRNDNAPKFVQEIFTFYVKENLLANSPVGMVTVTD
ADEGENAELSLFVEMNGVDEKKTGDKTEGEEGEKEQEEVFSIENNTGTIFSSASFDRERL
STYTFRVRAVDAGEPRKTATATVSLFVTDENDNAPSITSPANESYTLLPPASSARTIVRT
VTATDSDTGPNADLRFALVGGNPFRLFEIGHTNGVITLAEPLERRHRGLHRLVIRVNDSG
VPSLCATALVHVFINESLANATLVDAQVARSLMAPLSLDIAGDPDSERALGKQRLSVAIG
VLAGAAAVILVILLVVTARQCGAQGKNGYEAGKKEPEEDFFSPPGAQPQAGRGGGSDRGR
KPRRDKRNGSGGSAAAGGGKSDRSLYSGIVTVNGLRRHANDDDDEDISSASERLAARYCA
VDGDPSSPRMGGGRRHQSSPDLARHYKSSSPLPAVNLQPHSPPAEGKKHQAVQELPPSNT
FVGNGGCVGSAGSSSSSSGGSGNADAMSLGSDQCSEYGCQTGNKYSKQGTLRRVTFSVVS
QPQDGGCYDSGMEDSETPSSKSSSGPRLGALPLPEEGYERTTPEGSVGEEEHVENDARQL
PDVALTGKCTRECDEFGHSDTCWMPIRPSPRQRQRHGSDPPRLSTFAPGDDNNNLRGNDH
ESDSESAGSAGSSEPGVVISGEGQRLPLANGDPLGTLGSGDRNRNMGDHNRNLLNRKMTS
ASYDTFSSAGFGRRQQEEEGGEGQNPPEVIPLTRTGGDYKTTSCLTLSRREVYL
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggcttggtgcagtgcactcctccgcggcgcaggctctcagcctcgtggtctta
gtgctgcagctgctgactcagctaccgggtgccgactcagctctccggtaccgggtagcg
gaggagggcccacctgacgtcaagattggcaatgtggccgctgacctgggcctcacggca
ggtacaggcagcggcgatgtcaccttcgccctggagagcggctctgagtttttcaagata
gacaatgtgacaggtgagctgacaacaggcccgcggcgtattgaccgagagaagctcctc
cagtgtcaaatgatatttgatgaaaatgaatgtttcttggactttgaggtgtcagtgatt
ggaccactgcagagctgggtagatttgtttgaaggccgtgtggtcataacagacatcaat
gacaacaccccttccttcccctcacctgtcctccaactttctgttgaggagaatcgccca
attggcaccctttaccttctgcccacagcaacagacagggattttggacgaaatggcatc
gaccgctatgagctgatccaagatggtggagctgggtcaagttcaacaagacgcatagca
ggaggaaaccctattactagagtggatggacttggggaccggaggggtagaagtggagat
aatggaggagcagccaggagcactgtgtttgaactacaagtggcagatataccagatggt
gaaaaacaaccacagcttattgtgaaaggcacattggatcgtgagcaaaaagactcgtat
gagcttgtcctccgggttcgagatggagggaaccccccacgttcttcccaagccctgctt
cgtgtttccatcactgatgtgaatgacaacagcccacagttcgaaaggtcaacatatgag
gcagaaatggcagagaatgctcctccaggtacacctgtcctccaagtcagagcttcagac
cgtgacattggagtcaatgggcaagtggagtatgtctttggagctgccactgaatctgtc
aggcgacttctgcggctggacgaggcaactggatggctgagcgttcttcacaggattgac
agggaagaggtggctcagctcaggttcactgtaatggccagggacaggggtcagccccca
cgcactgaccgaaccacagtagttttggctgtccgggatgaaaatgacaatgtcccagtt
gtagagatccgaaagattggacggatcccagtacgagatggagcagcattagtaccagag
aatgttctggtggacacaccagtagctctggtgcaggtgtcagatcgagaccagggagag
aatggtgctgtgacctgcacagttgtaggagatgtcccattcacattgaagccagcaggt
gaaacagcacttccacccttacctgtagatgaagcctttgacaggaacaagaaaaaatac
ttcttacacacctctgctttgctggactatgaggtgaccaaagagtacagtgttaccatt
gtggcagtagattctggaagccccagtctatccagcaacagttcactgatggtacgggtg
gtagacatcaatgaccatgccccaacctttgcccagagtgttgtggaggtccactttgct
gagaacaactcacctggtgaaagggttgtcactgtagttgccacagatgcagacagtggc
aagaatgcagagattgcatattccctggactctgttgttaatgggccattttacatagat
gcagataacggagatatccgtgcaacaggtgttctggaccgcgagcaacgagagaggtat
gaactccgggtaattgccaaggacaagggcacaccctctctgcaaggctctgcaactgtt
gttgttcaggtgaccgatcgcaatgacaatgcccccaagtttgttcaggaaatctttaca
ttctacgtcaaagagaacttgcttgccaacagcccagttggcatggtcactgtgactgat
gctgacgaaggtgagaatgcagaacttagtctgtttgtagagatgaatggagttgatgag
aaaaagacaggagacaagacagagggagaagaaggagagaaggagcaagaagaggtgttt
tccattgagaacaacacaggaactatattctcctctgcatcgtttgaccgtgaaaggctt
tcaacctacaccttccgtgtccgggctgtggatgcaggggagccacggaaaaccgccact
gccactgtctcactctttgtgacggatgagaatgacaacgccccctcaatcacctctcca
gccaatgagtcctacacccttcttccacctgccagtagtgcccgtaccatagtcagaact
gtaacagccacagactcagacactggccctaatgcagaccttcgctttgctctggtgggg
ggaaatcccttcagactgtttgagattggccacaccaatggagtgattaccctggcggaa
ccactggagcggcgccacagaggtctgcatcgccttgtgatcagggtcaatgatagtggg
gtgccctctctatgtgccactgccctggttcatgtcttcatcaatgagagcttggccaac
gccaccctagtggatgcacaggtggcccgaagcctgatggccccactatccctggacatt
gccggagacccagatagtgagcgtgcattagggaaacaacgcctcagtgtagctattggt
gtcttagctggagccgcagcggttatccttgtgatcctccttgtagtcacagctcggcag
tgtggagctcaaggcaagaatggctatgaggctggtaagaaggagccagaggaggatttc
ttcagtcctccaggggctcaaccacaggcaggccgtggtgggggatcagaccgtggacgc
aaacctcggcgggacaaacgcaacggaagtggcggcagtgcagcagcaggtggaggaaag
tcagacagatcactgtacagcggcattgtcacagttaacggtctgcgtcgccatgccaat
gacgacgatgacgaggatattagtagtgctagtgagcgcctggcagcccgctactgcgct
gtggacggtgaccccagcagcccacggatgggtggtggcaggaggcaccagtcaagccca
gatctggccaggcactacaaatccagctcacctctccctgcagtgaatctacagccccat
tcccctccagctgagggaaagaagcatcaggcagtccaggagctacctccctcaaacacc
tttgtgggcaatggaggttgtgtggggagtgctggctccagcagcagcagtagtgggggc
agtggcaatgctgatgccatgtccctgggatctgaccagtgctcagagtatggctgccag
actgggaacaagtacagcaaacaggggacccttcgccgggtgaccttctccgtagtcagc
caaccccaggatggcggttgctatgacagtggcatggaggactcagagacaccgagcagc
aagagttcatcagggccgcgactgggagccctgccactgcccgaggaaggctacgagcgg
accacacccgaaggcagtgtgggggaggaggagcatgtggagaatgatgccagacagctg
ccagatgtagctctgacaggaaagtgtacgagggagtgtgatgagtttggccattctgac
acttgttggatgcccatccgtccatcgcctcgccagcgccagcgccacggcagcgacccc
ccacggctctccactttcgccccaggagacgacaacaacaatctccgtggtaacgaccat
gagagtgacagcgagagtgctggcagtgcagggagctcagaaccaggggtggtcatcagc
ggagaaggtcagagactacccttagccaacggtgatcctctcggcaccctgggtagtgga
gatcgcaacaggaacatgggtgatcacaaccgtaaccttctgaaccgcaagatgacttca
gcatcctacgacacgtttagcagtgcaggcttcgggaggcgtcagcaagaagaggaagga
ggagaaggccagaacccgcctgaggtcataccactgacgcggacgggaggggactacaag
accacgtcctgcctcacattgtcacgccgcgaggtctacctgtga
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