Scomber scombrus (Atlantic mackerel): 133992368
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Entry
133992368 CDS
T10651
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133992368 (col17a1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133992368
NCBI-ProteinID:
XP_062287100
LinkDB
All DBs
Position
12:17373999..17398475
Genome browser
AA seq
1832 aa
AA seq
DB search
MEELTRQMDFSGGLSEENVVTETITSTTRLTSLPPKGTSGSNHRNMSSSAGGLSLEKNVL
TLNSGTYFNSSSVGVNTSNYSSSSGVYLGGDSSGGGDGGGSYIDGESYGCGGGVGSSGAG
GGSYHVSSVSKVRTSSSGGARRTQTAGSSRGLSPAFRERKTISSRSGGYDGSSSANSSPE
FTRKDYGNYCSSGTRGRSESRESEIRARLQSASPSASRWTELDDVKKLLKGRSNSVSPTR
SSTTLPVPKKASVETKTVSVASQSVSTSFGSGVTSAGFNTIDASGLYDNGVTSGQFDTGV
KTGQCETCVRSGQYDAGVKSSQYDVSLSSGQYGTGVKSSQYDVSLSSGQYGTGVKSSQYD
ASVSSGQYGTGVKSSQYDGSVSSGQYGTGIKSSQYDASVSSGQYGTGVKSSQYDASLKSE
QYSAGVRSGQYDTSTLDALLPSFSWSTSTLPSSSTTVINGNASSYTYQAGNNNMGGSSPL
SATSPSSLSVYGFQNNLAPTSGSVLTTNGTNVNAHLGGYGVQKNVSNGGGVVSTGVSTTT
RSQTEDAYKKDYKFLISEKENVPAKRDAEILILAKDSGKHFTTSGSSVHLGGGSLSGDSI
KKEKLISSYSETAPLKTETGNTYYGSSGVVMKDKATYAEIHRDSGIFGGGGFCCCSDACC
SWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVATLESASSAATAHTSRLSGTNDI
NAYVDGAGGTHTDIHLAAGGGSGSGTRTRIGVAGTSGSTSGGGNAIDIGTGSSSGAAGGA
TGAGGTIGVSAGGAGTSFSGGASSGGTSLSGGTGTSGTSYGVGAGTSGTSYGVGTGGPIF
TGLGTGVSGGHIDLAALQIAIQRMMISEMQSQAFRALIASSVQVERGLPGLKGDTGAKGD
PGFPGQPGPPGSIGHPGADGQKGQKGSQGDHGPEGPQGIRGREGPPGPRGEPGHASFGLK
GDRGDSGSPGPKGEPGTHGLSGPPGQPGPQGFRGEAGLPGAKGEAGERGLRGLQGEAGLP
GLSGPAGEKGSKGTMGLSGQDGAKGSRGDQGPAGPPGLRGPSGPPGDAGLPGTPGLQGPP
GIPGNPGQPGAKGEMGQAGKIINAAGSASVGIPGPPGPAGPPGPAGHPGLSGPIGPAGLP
GQPGPKGDRGYKGEQGEAGITVRTSDSISSTRSERQYGAGGVSAIPGPPGPPGPPGRPGD
SRQGPPGPPGPQGPAGYGRPGPKGEKGDSIHASSSGVHYGQPGPPGPPGQKGDTGSPGPR
GYQGETGLPGTPGRPGSSERVSTYAGGHGTQGPPGPPGPPGRQGPQGIKGDTGAPGLPSS
SRGSISVTSGPPGPPGPPGPSGPPGAFSSTEMHHYINTYLSRNRQAGIPGPPGPPGPPGI
PGTFSGSIEDISTRIIAYIQRSGSSFGTGVQGLPGPPGPPGPASGSLTVNALITMLQRDD
VRRYVSGQPGPQGPPGPPGASGGISGTYNVHEIATYVFNIMNERGIARGLPGPPGPPGPA
GAGGSSYTSATIDYSALIRNSDFRSWISSAVQHGPPGPPGVSGRPGPPGPQGPPGVSTSI
VQGTGSRGYSLEEIQRHLQGSSFRGLPGPPGPQGPQGPQGPPGRQSGSVTYNGNFPRESI
RAEVQEYLTSDNVRRTIMGPPGPQGPPGHKGDRGEPGYSQSYVHSSSYPQGDPRYGSDQK
DIDVSRLAERLDYSNVALKVTDYIKNQGLLQDYLVEGPWRSNVRAIQGPSGPPGPPGPPG
YSRVIGTYGNITADLMDFFRTYGTIPGPPGIPGPKGERGYPGPRGEKGDPGRQGLSGLPG
TYTVQIPHRVQKRDTGDKVVRHQLRRRQANIG
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttaacgagacagatggacttctcaggaggcttgtcagaagaaaatgttgtc
acagaaactataacttccacgaccagactgacttctctgccaccaaagggaaccagcgga
tcaaatcacaggaatatgtccagcagtgctggagggctgagcttggagaagaatgtctta
accctgaacagtggaacttatttcaattcatcctctgtaggtgttaataccagcaactac
agctcctcctcaggagtttacctcggcggagactcctcaggaggaggtgatggagggggg
agctacatagatggagaaagctatggatgcggcggcggtgttggcagcagtggtgctgga
ggtggcagttatcacgtgagctcggtgtcaaaagtcaggaccagctcgtctgggggtgcc
aggagaacacagactgctggctcatcacgaggtctgtcaccagctttccgggagaggaag
accataagcagtcgctcaggaggttatgacggaagttccagtgcaaattcctctccagaa
tttacacgcaaagattatggaaactattgctccagcggcacacgagggaggagtgaaagc
agagagagtgagatcagagccagattacaaagtgcctccccctcagcctccagatggacg
gagttggacgatgtgaagaagctgctgaagggtcgctccaacagtgtcagccccactcgc
tcctccaccaccctgcctgttccaaagaaagccagcgtggaaaccaagaccgtctccgtg
gcctctcagtcggtgtcaacttcgtttggctctggtgtgacgtcagctggattcaacacc
attgatgcatctggcctgtatgataatggcgtgacatctgggcagtttgatactggtgtg
aaaacaggacagtgtgagacttgtgtcagatcaggccagtatgatgctggtgtcaaatca
agccagtatgatgtcagtctgagttcaggacagtacggtactggtgtaaaatcaagccag
tatgacgtcagtctgagttcaggacagtatggtactggtgtaaaatcaagccagtatgat
gctagtgtgagttctggacagtatggaactggtgtaaaatcaagccagtatgatggtagt
gtgagttcgggacagtacggaactggtataaaatcaagccagtatgatgctagtgtgagt
tcgggacagtacggaactggtgtaaaatccagccagtatgatgctagtctgaaatcagag
cagtacagtgctggggtgagatcaggccagtatgacacttccacgctggatgctctgctt
ccatctttctcctggtccacctccaccctgccctcctcctccaccacggtgatcaatggc
aatgccagcagctacacgtaccaggcgggcaacaacaacatgggaggatcctcacccctc
agtgccacctcaccctcgtccctgtcagtttatggctttcagaataatctggcgcccacc
tctggcagtgtcctcaccaccaatggaactaacgtcaatgctcatttgggaggttatgga
gttcagaagaatgtgtcaaacggtggtggtgttgtcagcactggagtctctacaaccact
agatctcaaactgaagatgcatataagaaagattataagttcctgatctctgaaaaggag
aacgttccagccaaaagagatgcagagatactaattttggccaaagacagtggcaagcat
ttcaccaccagtggcagcagcgttcatttaggaggagggtcactttcaggagactccatt
aaaaaagagaagcttatttcaagctatagtgagacggcgccactgaagacagagactggc
aacacttactatgggtcgtctggagttgtaatgaaagacaaagccacctatgcagagatt
cacagggacagcggcatctttggaggaggaggattttgctgctgctctgacgcatgctgc
tcctggtggaaatggctgctgggtcttctccttctctccttgctcctgctgggactactc
tttgggctcattgcattagctgaggatgtgagaaagctgaagaatcgagtggctactctg
gagtctgcatcctcagccgcaactgctcacaccagtcgtctgtcaggtaccaatgacatc
aacgcctatgtggacggtgcaggtggcacccacactgacatacacctggctgctggagga
ggctcaggctctggtaccagaacacgaatcggagttgctggtaccagtggctccaccagt
ggaggtggaaatgccattgacatcggcactggaagtagctctggggctgctggcggtgcc
accggggccggtgggaccattggagtcagtgctggaggtgctggcaccagcttcagtggt
ggtgccagctctggtggcaccagcttaagtggcggcaccggcactagtggcaccagctat
ggtgtcggcgccggcactagtggcaccagctatggtgtcggcactggtggccccatcttc
actggccttgggacgggtgtaagcggaggacacatagatcttgcggctctccagattgct
atccagcgcatgatgatatctgaaatgcagtcacaggcattcagagctcttatagcatcc
tcagtgcaagtagaaaggggattgcctggacttaaaggggacactggagctaaaggagat
cctggtttccctggacagccaggtcctcctggttcgattggccacccaggtgctgatggt
caaaagggacagaaaggaagccaaggtgatcatggaccggaggggccacaaggtatcagg
ggtcgtgagggccctcctggccccagaggtgagccaggacatgcaagttttggactaaaa
ggtgacagaggagattctgggtcgcctggaccaaaaggcgaacctggaactcatggcctt
tctggaccaccaggtcaaccaggtcctcaaggtttccgtggagaggcagggctaccaggg
gctaaaggtgaagctggtgaaagaggtctcagaggtctgcaaggtgaagctggtttacca
ggtctgtctggcccagctggagagaaaggatccaaaggaacgatggggttgtctgggcaa
gatggtgcaaaaggctcaagaggtgaccaaggacctgctggaccccctggacttagaggt
ccttctgggcctcctggagatgctggacttccaggaacacctgggcttcaaggaccacca
ggaataccagggaatccaggacagccaggggccaaaggtgaaatgggtcaagcagggaaa
atcattaatgcagctggctccgcctctgtgggtatcccaggacctcctgggcctgctgga
cctcccggcccagccggacatccaggattgtcaggtcctattggtcctgctggtctgcct
ggccaacctggtcctaaaggtgacaggggatacaagggagagcaaggagaagcaggaata
acagtgagaacgtctgattctataagctcaaccagatctgagaggcagtatggtgctggt
ggagtctcagcaatacctggcccaccaggtccgcctggacctcctggacgtccaggagat
tcaagacaaggacctccaggaccacctggtcctcaaggtcctgcaggttatggaagacca
ggacctaaaggagagaaaggagattcaatccatgcatcgagctctggggtgcattatgga
cagccaggaccacctgggccacctggacagaagggcgacacaggttcacctggaccaaga
gggtaccaaggtgaaacaggtttgcccggcaccccaggaagaccaggaagctcagagaga
gtgtcaacttatgctggaggacacgggacccaaggaccaccaggtccaccagggcctcct
ggacgtcaaggaccacagggaattaaaggggacactggagctcctggtttacccagctct
tcacgaggctcaatctcagtcacctcagggcctcctggtcctccaggtcctcctggccct
tcaggcccacctggcgcattctcctctactgagatgcaccattacatcaatacctatcta
agcagaaacagacaggctggtattcctggacctccaggtccacctgggcctccaggaatc
cccggaaccttctcaggctctatagaggacatctccactcgcatcattgcatacatacaa
cgttcaggctcaagcttcggcactggtgttcagggtcttccaggaccacctggccctcct
ggccccgcctcgggatccctgactgtcaacgctctcattaccatgctacagagagatgat
gtgaggagatatgtgtcaggacaaccagggccacaaggaccaccaggaccaccaggggca
tcaggaggaatctctggcacttacaatgtacatgagatagctacttatgtcttcaacatc
atgaatgagagagggattgctagaggtctgcctgggccaccaggccctcctggacctgca
ggtgcagggggctctagctatacttctgctacgattgactactctgcattgataagaaat
tcagacttccgttcatggatttcctctgctgtacaacatggtcctcccggtccgccgggt
gtttcagggcgtcctggccctcctggcccccaggggccgccaggagtctccacttcaatt
gttcagggaacgggaagtcgcgggtacagcttggaggaaattcagcgtcacctgcaaggt
tctagcttcagaggtcttcctggccctcctggtcctcaaggtcctcaaggtccacagggt
ccaccaggcagacaaagtggatcggttacctacaatgggaacttccctcgggagtctatc
cgcgctgaagttcaggagtatctgaccagtgacaatgttcgtcgaaccattatgggacct
ccaggtccccaaggacctcctggtcataaaggagatcgtggagagccaggttactcccag
agctacgtgcatagctcgagctaccctcagggtgaccctcgctatggttcagaccaaaaa
gacattgatgtcagcaggcttgctgagagactagactactccaacgttgctttgaaagtt
acagactacatcaagaatcaaggcctcctgcaggattatctggttgaaggtccctggagg
tcaaatgtaagagcgattcaaggccccagtggtccacctggccctcccggaccacctggc
tacagccgtgtcattgggacctacggcaacatcacagctgacctgatggacttcttcaga
acctatggcaccatccctggtcctccaggaatccctggaccaaagggagagagagggtac
ccaggacccaggggagaaaagggtgatcctggacgtcagggtttatcaggactaccaggg
acatacactgtacaaattccacaccgagtgcagaagagggataccggcgataaagtggtt
cgtcatcagctgcgtcgccgtcaagctaacattggctaa
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integrated database retrieval system
