Scomber scombrus (Atlantic mackerel): 133992403
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Entry
133992403 CDS
T10651
Symbol
lef1
Name
(RefSeq) lymphoid enhancer-binding factor 1 isoform X1
KO
K04492
lymphoid enhancer-binding factor 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04310
Wnt signaling pathway
ssco04520
Adherens junction
ssco04916
Melanogenesis
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
133992403 (lef1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
133992403 (lef1)
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
133992403 (lef1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133992403 (lef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133992403 (lef1)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
133992403 (lef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
133992403
NCBI-ProteinID:
XP_062287108
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All DBs
Position
2:complement(22351515..22392593)
Genome browser
AA seq
380 aa
AA seq
DB search
MPQLSGGGGDPELCATDEMIPFKDEGDPQKEQIFAELSHSEEEGDLADIKSSLVNESESS
PNSNSHDVSNAARQIPQDSYHEKHRDHPDDGKHQDMYSKGHPYSGYPGYIMMSNMNNDSY
MNNGSLSPPMPRTSNKVPVVQPSHAVHPLTPLITYSDEHFAPGSHSGHHPQDANNKQGMP
RHHPGPDMTNFYSLSPGGVGQITPPLGWFSHHMVPGPPGPHATGIPHPAIVNPQVKHEPL
HETDIMHMKPQHEQRKEQEPKRPHIKKPLNAFMLYMKEMRANVVAECTLKESAAINQILG
RRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREKMQETATGGKRTN
FSTCKAKAAATGPLLEMEAC
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgccacagttatcaggcggcgggggagacccggagctgtgcgccacagacgaaatgatc
ccgttcaaagacgaaggagacccacagaaagagcaaatcttcgccgagctcagccactcg
gaggaagagggagacctggcggacatcaagtcatctctggtcaacgaatcggagagcagc
cccaacagcaacagccacgatgtgagtaatgcagctagacaaataccgcaagattcatat
cacgaaaaacacagagaccatccggatgatggaaagcatcaagacatgtacagtaaaggc
catccgtactcgggttatccaggctacatcatgatgagcaacatgaacaacgactcctac
atgaacaatggctccctctcgccgcccatgcccagaacgtccaacaaagttcccgtggtg
cagccgtcccatgcagtccacccactcactccactgatcacgtacagtgacgagcacttc
gctccaggatcccattctggtcatcacccccaagatgccaacaacaaacaaggaatgccg
aggcatcaccccggaccagacatgaccaacttctactccctgtctcctggaggagtggga
cagatcacgccaccgctgggatggttctcacaccacatggtgccaggacccccaggtcct
cacgccacaggaatcccccacccagccatcgtcaacccccaggtcaaacacgagcctctg
catgaaacagacatcatgcacatgaaaccccagcacgaacagagaaaggagcaggagccc
aaaagaccgcacatcaagaagccgctaaacgccttcatgctctacatgaaagagatgcgt
gcgaatgtggtcgccgagtgcacactgaaggagagcgctgccatcaatcagatcctggga
cgaaggtggcatgctttatctcgggaagagcaagctaagtattatgagttagcccgcaag
gaacggcagctccacatgcagctctacccaggctggtccgctcgagacaattatggaaag
aagaagaagcggaagagggagaagatgcaggaaacggccacaggaggaaaacggactaat
ttctccacatgcaaagcgaaggcagcagctacgggccctctgctagagatggaggcctgt
tag
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