Scomber scombrus (Atlantic mackerel): 133992537
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Entry
133992537 CDS
T10651
Symbol
desma
Name
(RefSeq) desmin a
KO
K07610
desmin
Organism
ssco
Scomber scombrus (Atlantic mackerel)
Pathway
ssco04519
Cadherin signaling
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
133992537 (desma)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133992537 (desma)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133992537 (desma)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
133992537 (desma)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
Filament_head
ZK652
DUF8429
DUF7491
CCDC89
CLIP1
PMD1-like
KASH_CCD
GAS
KIF21A_4th
ABATE
SPC25_N
COLEC12
Mua
Retron_Ec48_antiviral
CCDC39
GMNC_CC
DUF4407
SH3BP4_C
CCDC92
CEP135_TSGA10_CC
DUF2935
FKBP15
CCDC192
Ninein_long_CC
Phage_scaffold
DUF4515
Motif
Other DBs
NCBI-GeneID:
133992537
NCBI-ProteinID:
XP_062287170
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Position
13:complement(17213139..17220676)
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AA seq
474 aa
AA seq
DB search
MSKSFSSSSQSASSYRRTFGSGVGSSPMSSLFSSGGGRSSSASHMASRVYEVKSSGAPSY
SNYRLSSGAGAGYGSSTAMRTYSGEKLDFNLADAMNQDFLNTRTNEKAELQHLNDRFASY
IEKVRFLEQQNGALTVEIEKLRGREGPGRVADLYEEEMRELRRQIESLSNQRARVEVERD
NLADDLQKIKLRLQEEIHQKEDAENNLSAFRADVDNATLARLDLERRIESLQEEIAFLKK
IHEEEIRELQSQMQETQVQVQMDMSKPDLTAALRDIRMQYEGIAAKNISEAEDWYKSKVS
DLNQAVNKNNDALRQAKQESMEYRHQIQSYTCEIDSLKGTNESLLRQMRDMEDRMTREGS
SYQDTITRMEEEIAKMKDDMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTTAP
VQSAYSSIGFRETSPESQHRTPEVHSKKTVVIKTIETRDGEVVSESTQHQQDIM
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtccttctcctcctcaagccagagtgcctcctcataccgtcgcacctttggc
tcaggcgtcggttcatccccgatgtcttccctcttctcatcaggaggaggccgcagctcc
tctgccagccatatggccagccgcgtgtatgaggtcaagagcagtggtgctccctcctat
tccaactacagattgtcctctggtgctggagcagggtacggctcctctacagccatgcgc
acttattcaggtgagaaacttgacttcaaccttgctgatgcaatgaaccaggacttcctc
aacacaaggaccaatgagaaggccgaacttcagcatctcaacgatcgctttgccagctac
atagagaaggttcgtttcctggagcagcagaatggagcgctgaccgtggagattgagaag
ctgaggggccgcgaggggcccggacgtgtggctgatctgtatgaggaggaaatgagggag
ctgaggaggcaaattgagagcctctccaaccagcgtgcccgagtggaggtggagagagac
aacctggctgacgacctgcagaaaattaaactgagactgcaagaggagattcaccagaag
gaagatgcagagaacaacctttctgctttcagagccgatgttgacaatgccactctggcc
aggctggacctggagagacgcattgagagtcttcaagaggaaattgccttcctcaagaag
atccatgaagaggagatccgtgagctgcagagccagatgcaagaaactcaggtgcaggtc
cagatggacatgtccaaacccgacctgactgctgctctgagagatatccgcatgcagtac
gagggcatcgccgccaagaacatttcagaggctgaagactggtacaagtctaaggtgtct
gatctgaaccaggctgtcaataagaacaatgatgcactgcgtcaggccaaacaggagagt
atggagtacaggcaccagatccagtcctacacctgtgagattgactcactcaagggcact
aatgagtctctgctccgccagatgagagatatggaggatcgcatgactcgtgaaggctct
agttaccaggataccatcacacgaatggaagaagaaattgccaagatgaaggatgacatg
gcccgtcacctgagggagtaccaggatctccttaatgtcaagatggctcttgatattgaa
attgccacttaccgcaagctgctggagggagaggagagcaggatcaccaccactgcgcct
gtccagtctgcctattctagtattggattcagagagaccagtcctgagtcccagcatcgc
accccggaagttcactccaagaagactgttgtcatcaagaccattgagacccgcgatgga
gaggttgtcagcgagtccacacagcaccagcaagacatcatgtaa
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