Scomber scombrus (Atlantic mackerel): 133992547
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Entry
133992547 CDS
T10651
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133992547 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133992547 (taf5l)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133992547 (taf5l)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133992547 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
133992547 (taf5l)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133992547 (taf5l)
STAGA complex
133992547 (taf5l)
TFTC complex
133992547 (taf5l)
SAGA complex
133992547 (taf5l)
SLIK complex
133992547 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
TFIID_NTD2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_WDR19_1st
PROPPIN
PEP5_VPS11_N
Beta-prop_IP5PC_F
Nbas_N
WD_LRWD1
Beta-prop_ELP1_1st
Lysis_col
Motif
Other DBs
NCBI-GeneID:
133992547
NCBI-ProteinID:
XP_062287191
LinkDB
All DBs
Position
2:33408586..33415251
Genome browser
AA seq
600 aa
AA seq
DB search
MKRVRTEQIQYAVAQYLKRRQYVDTEASLKGAKLFQSAEEMAASLTVQTESGCANIVSAA
PCQSDPQQYETQFSRLRSFLSETEISWAKEVSSILYPLFVYLHLDMVRCGLKGAVDGFYS
RFHGAFLQDSEQRATVEQLRHVLTAQDVAANPKLSAFLEHKYVVHLTEPAYSYLLRYLQS
EDNSALCRALSTHLQVEVTASRRTDYQLYGAAGGATAAPNSTSSWAGVDGAEGGEGVDVP
AGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFHHTEQLLNTAEVSADSRLLAAGFNS
STVKLWSLRARKLKAKPHQADVSHIHLACDVLEEEVEEEDVSGSEIKTLRGHSGPVFRTA
FLTDSSGLLSCSEDTTIRYWDLGSFTNTVLYQGHAYPVWDVDVSPCSLYFASGSHDRTAR
LWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTIRLWSTQQGASVRLFTGHRG
PVLSLAFSPNGKYLASAGEDQRVKLWDLASGALFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRNSHGGTPADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGTAQEKAEQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggttcgcacggagcagatccagtatgctgtggctcagtacctgaagcggagg
cagtatgtggacactgaagcctccctgaaaggagccaaactcttccagtcagctgaggag
atggctgccagcctcacggttcagaccgagtcgggctgtgccaacatcgtctcggctgca
ccgtgccagtcggacccgcagcagtacgagacgcagttctccagactgcgctccttcctg
tcagaaacagaaatatcgtgggcgaaggaagtgagcagcatcctctacccgctcttcgtc
tacctccacctggacatggtgcgctgcggcctgaagggggcagtagatggtttctacagt
cgtttccacggcgcctttcttcaggacagcgagcagcgcgccaccgtggagcagctccgg
cacgttctcaccgctcaggacgtagcggccaaccccaagctgagcgctttcctggagcac
aagtacgtggtgcacctgacggagccggcctacagctacctgctgcgctacctgcagagc
gaggacaacagcgccctctgcagagcgctcagcacacacctgcaggtggaggtcaccgcc
tccaggcgtacagactaccagctgtacggagcagccggaggggcaaccgccgccccgaac
tccacctcctcctgggcgggagtggacggggcagagggaggagaaggggtggacgtccct
gcagggatcccgcagagtgaggcggctctggaggctctgcaggactgcatcaagaaagtc
cgtgagggtcccccgtcgctcaccaccgtgtgtttctacgccttccaccacacggagcag
ctgctgaacaccgccgaggtctccgccgacagccggctgctggccgccggcttcaacagc
tccacggtaaagctgtggagcctccgagcccggaagctgaaggctaaaccgcatcaggcc
gacgtgtcacacatccacctggcgtgtgacgtactggaagaggaagtggaagaggaagac
gtctccggcagtgagataaagactctgcgaggtcacagcggtccggtgttccgtaccgcc
ttcctgaccgacagctccggcctgctctcctgctccgaggacacgaccatccgttactgg
gacctgggcagcttcaccaacacggtgctctaccagggacacgcctacccggtgtgggac
gtggacgtcagcccctgcagcctctacttcgccagcggctcccacgaccgcaccgcccgc
ctctggacgttctcccgcacctacccgctgaggctctacgccgggcatctcgccgacgtc
gactgcgtcaagttccaccccaactccaactacctggccaccggctccacagacaaaact
atccggctgtggagcacccagcagggggcgtcggttcgcctcttcacaggccaccgcggc
ccggtgctgtcgctcgctttctcacccaacgggaagtacttggcgtctgccggcgaggac
cagagagtgaagctgtgggacttggcctcgggggcgttgttcaaagacctgcggggacac
acagacagcgtcaccagcctgtctttcagcccggacagcagcctggtggcgtcgtcgtct
atggacaactctgtcagggtgtgggacatcaggaactcccacggcgggacgccagctgac
ggctcgtccagcgagctggtcggactgtacacggggaacaccagcaacgtgctgaacgtc
cagttcatggcctgcaacctgctgctggtgacgggaactgctcaagaaaaagcagagcag
tag
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