Scomber scombrus (Atlantic mackerel): 133992565
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Entry
133992565 CDS
T10651
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04622
RIG-I-like receptor signaling pathway
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133992565 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133992565 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
133992565 (ifih1)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133992565 (ifih1)
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
133992565 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
Helicase_C
ResIII
CARD
SWI2_SNF2
DUF3638
C1_4
Motif
Other DBs
NCBI-GeneID:
133992565
NCBI-ProteinID:
XP_062287212
LinkDB
All DBs
Position
13:complement(15011137..15023615)
Genome browser
AA seq
979 aa
AA seq
DB search
MEDDKQNTVWENLIEDFRPRLRKLIVVEQVLDHVYFIKDDQKDKIRQKARTEGDTVAANL
LIDAVIKKPHEQGWFTAFIVALKQAGCLLAADYVQAKLPEPEEEAENDYCVQLIHLLYPS
LIDMQTDAVCLHCQGDELLTQEDADIVNTESKNRGSRNGARELLRRIVRNRPGWFSKFLN
ILRVTEHKDLYQLTGGSPESDMQDEPSGSSSASKESTARVEGSSTPESKDTSMTTEETTD
LYNGENSDSKQLPNSSEPSQPDGTDSVAAAGGSEKADIVLRDYQMEVARPALEGKNIIIC
LPTGSGKTRVAVYITKKHLDCRRTAGQSGKVVILVNKIPLVEQHYSAEFLPFLKHTSKVE
RVSGDSQLKISFTEIVKKNDVIICTAQILENYLERSNKGDDEGVDLKDLTLIVIDECHHT
QKGGVYNHIMMRYLKQKHKNKRLKKEQKTPVPLPQILGLTASPGVGGATKMDKAEDHILR
ICANLDASKIMTRSLGKHKKEIDKIIVTVEDRKEDPFGDVIKKIMNAIHTHAELFPTCEL
GSQNYEQWVVQKERTAAKEEDQKVRVCAEHLRQYSEGLQLSNTIRMCDAFSFLNKYHEEE
KKRKTTPDDEIAIQITDTERFLLKLFDENKEELKKLAENPEYENDSLSKLRAKILHEFSS
RDQARGIIFTKTRRSAIALSQWVQENPKFADIGVKAAHVIGGGDQSVVKPMTAAEQRDVL
SKFGTGDVNLLIATTVAEEGLDIPACNFVIRYGLVTNEIAMIQAQGRGRAEDSSYTLVEV
KGSGVAERECVNEYRTKMMHKAIDKIRALNHADYDRKITEFQIQAIMEEKVRMIKQKQKD
MKSENPSELKFSCRGCSKDVCSGEDIQIIENMHRVNVSSEFSQLFIQRENTSLQERLLDY
ETNGFIACKECGQRWGSMMLYRGIECPCLHVKNFVVATNGKKISKCTKWSELAVKFSAFD
YAEHASRMAESSDDEEETE
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgataaacaaaataccgtgtgggaaaatctcattgaggattttaggcctagg
ctgcgaaaacttatagtggtggagcaggtcctagatcacgtatatttcattaaagacgac
caaaaggataagatccgtcaaaaggctaggaccgagggtgacactgtggccgcgaatctc
cttattgacgcagtcatcaagaagccacacgaacagggctggttcactgcgtttattgtc
gccttgaaacaagcaggttgtctgctggcagcggactacgttcaggccaaactcccagag
ccagaagaggaggccgagaatgactactgcgtgcaacttattcacttactgtatcccagt
cttattgacatgcagacagatgcggtgtgcctacattgtcagggggacgaactactcacc
caggaagacgccgacattgttaacactgaatcgaaaaacagaggatccaggaacggagct
cgtgaacttctgagaagaattgtgagaaatcgaccaggatggttctctaaatttctcaat
attctgcgagtaactgaacacaaggacctttaccagctgactggagggtcacctgaaagt
gacatgcaagatgagccttcaggaagtagttctgcctcaaaggagagtacagcaagagtt
gaaggctctagtactccagaatctaaggacaccagcatgaccacggaggaaaccacagac
ctctacaatggagaaaactctgactccaaacaactgccaaacagctctgagccctcacag
ccagatggaactgactcagtagcggcagctggaggctcagaaaaagctgatattgttctt
cgagattatcagatggaagtagctagacctgccctggaggggaaaaacatcatcatatgc
ctcccgacaggaagtggtaaaaccagagttgcagtttatattaccaaaaaacatctggac
tgcaggaggactgcagggcaatcaggaaaagtggtcatcctggtgaacaagattcctctt
gttgagcagcattattccgcagagttccttccatttctgaagcacacatctaaagtggag
agagtgagcggagactcccagctcaaaatctctttcacagaaatcgtgaagaaaaatgat
gtcatcatttgtacagcccagattctggagaactacttggagaggtccaacaaaggagac
gacgaaggagtggatctaaaagatctgacactgattgtaatagatgagtgtcaccacact
cagaagggaggagtctacaaccacataatgatgcgctacctgaagcagaagcataagaac
aaaaggctgaagaaggagcagaagacgcctgtgcctctccctcagatcctgggcctgact
gcgtcacccggggttggaggagccacaaaaatggataaagctgaggaccacattctgcgt
atttgtgcaaacttggatgcttccaaaatcatgacaaggagccttggaaaacacaaaaag
gagatagacaagataattgtaacagttgaagacagaaaagaggatccttttggggatgta
atcaaaaaaattatgaatgccattcatacccatgctgagctgttccccacttgtgaactt
ggctctcagaattatgaacagtgggttgttcaaaaagaacgaacagctgcaaaggaggaa
gatcagaaagttcgggtttgtgcagagcaccttagacagtacagcgagggtctgcaactc
agcaacaccattcgcatgtgtgatgccttcagtttcctgaacaaataccacgaggaggag
aagaagagaaaaacaaccccagatgatgagattgccatacaaattacagacacagagaga
tttctcctcaaattgtttgacgagaacaaggaagagctgaagaagctcgcagagaatcca
gagtatgaaaatgacagcctgtcaaaactaagagcaaaaattctgcatgagttcagcagc
agggatcaagccagagggatcattttcaccaagacacgtcgcagtgccattgctctaagt
cagtgggtgcaggaaaaccccaagtttgctgacattggagtgaaagctgcacatgtcatt
ggaggaggagaccagagtgtagttaaaccaatgacagctgcagaacaaagggatgttttg
agcaaattcggcactggcgacgtcaacttgctgattgctaccacagtggcagaggaaggt
ttggacataccagcatgcaattttgttatccgatatggtcttgtgaccaatgagatcgct
atgattcaggctcaaggcagaggaagagctgaggacagcagttacactctggtggaggtg
aaggggtctggggtggctgaaagggagtgtgtcaatgagtaccgcacaaagatgatgcac
aaagccattgacaaaatcagagctttaaatcatgcagactatgacagaaagatcacagag
tttcaaattcaagctataatggaggagaaagtcagaatgatcaagcaaaaacagaaagac
atgaagagtgagaacccgtctgaactgaagttcagctgtcgaggctgcagcaaagatgtc
tgcagtggtgaagacatccagatcattgaaaacatgcacagagtcaatgtttcatcagag
tttagtcaacttttcattcagagagaaaacacttctcttcaagagcgacttctagattat
gagaccaacggcttcatcgcatgcaaggagtgtgggcagagatggggttcaatgatgctt
taccgcgggatagagtgcccttgcctacatgtgaaaaactttgtggtggctaccaatgga
aagaagattagcaaatgcaccaagtggagtgagcttgccgtcaagttttcagcttttgac
tacgccgagcatgccagccggatggctgagagctcagatgatgaagaagaaacagaatga
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