Scomber scombrus (Atlantic mackerel): 133992616
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Entry
133992616 CDS
T10651
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133992616 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133992616 (bard1)
04121 Ubiquitin system [BR:
ssco04121
]
133992616 (bard1)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133992616 (bard1)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133992616 (bard1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133992616 (bard1)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133992616 (bard1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133992616 (bard1)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133992616 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_UBOX
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
133992616
NCBI-ProteinID:
XP_062287287
LinkDB
All DBs
Position
13:17380019..17403237
Genome browser
AA seq
803 aa
AA seq
DB search
MDNDVPVQAMDWKNTKEAVSNFRRLLLCSKCLDIMTEPVCLGMCEHLLCRPCAGSRVGDG
CVVCHSPAWVKDIQINRQLSSITQLFCGLESLLNPKEQSDSPLAEIQTQNENSVIKHKKN
FKIWFSPRSRKVRCMVEKPSEVTVPESRSSGETAAQPDAVATQCKDLSVFNFTSSSQDSD
SCSQKCHTDNRNRKNTLTKKNAANRKASKQGTTRTTQKQTKKKMLEAINQQWGITDGVDA
LTEQEQPCAEGARRSSKRVSFLSPAVTSDEPQPDVSKGSPNELCLISGRSNMTDSPSGGS
IIVLNNQAQLCENMSNRVIQHDTLSANDPIMTADPEKQDNGSPHSSKRSRVEEKVITLET
TPKRPRVSPGRRRKSLGQKSPAVLNPRSLISPRCEKNTITPRKEQEESPSVPAIAGRKSP
STQTSVGRPTTGSPAVMKRNHKGETPLHLAAIKGDVEAVKELLDQGADPNLKDNAGWTPL
HEACNLGHLGVAEVLVSRGALLNTPGYENDSPLHDAVRNRHPAIAKLLLQLGALQNVLNL
HGKRPADYAVSLEMLEIFQEASEGTQNAKTSLSPSAGLSVVNDCVRKDESIVLLTSKLSQ
EEQHQLVKLGPLLGGRMTDTFSGSVSHVVVPEGPMPTTYSSLLGLLAGCWVVKYSWVEAC
LQAGKWIPETEHEAGEGPQRSRINRYSLLPPLFDGCFFFLLGTFNMPTKDELTKLLREGG
GKLLSRQPKPDSDVTQTLSAAAYHALPGSDQALCTQYIIFDPQGPHKPAVVRRGKVWSAP
STWLIDCIAAFCLLPVPDPQTLV
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggataatgatgtccccgtacaggcaatggactggaagaacactaaggaggctgtttca
aactttcgacgcctgctgctttgctcaaaatgcttggatataatgacagaacctgtgtgt
ctaggaatgtgcgagcatttgctgtgcaggccctgtgctggctcccgggtaggagatggc
tgcgtggtttgtcatagtcctgcatgggtgaaagacattcaaatcaacaggcagctcagc
agcatcacacagctcttctgtggtttggagtccctgctgaatcccaaagaacagtcagac
tcccctctagctgagattcaaacacaaaatgagaactctgtcattaagcacaagaagaat
ttcaagatctggttcagcccccgtagccgtaaggtacgttgcatggtggagaagccttca
gaggtcactgtaccagaaagcaggtcttctggagaaacagctgcacagccagatgccgta
gccactcaatgcaaggacctgtcagttttcaatttcacgtcatcctcccaagactctgac
tcttgttctcaaaaatgccacactgacaacagaaacaggaagaacacattaaccaagaag
aatgctgccaacaggaaggcatcaaaacaaggaaccaccaggaccacacaaaaacagacc
aagaagaagatgctggaggccataaaccagcaatggggcattactgatggggtagatgcc
ttaacagagcaggaacagccctgtgctgaaggggcaaggaggtctagtaaaagggtttcc
ttcctaagccctgctgtcacatctgacgagcctcagcctgatgtgtcaaagggtagtcct
aatgaactctgcctcatctctggcaggagcaacatgacagacagtccctcaggaggcagc
atcattgtactcaataaccaagcccagctttgtgagaacatgtctaaccgtgtcattcag
catgacacgctgtctgcaaacgaccccatcatgactgctgatcctgagaaacaggacaat
ggatctccccactcctcaaaacgatcaagagtggaggagaaggtcatcaccttggagact
acaccaaaaaggcccagggtctcccccggtcggaggagaaaatcgcttggtcagaagtct
ccagctgtccttaaccctcgatctttgattagtcctaggtgtgaaaagaacaccatcacc
cccagaaaagagcaggaagagagcccctctgtcccagctatcgcaggtagaaaatctccc
tctactcaaacgtcggttggcaggcccaccacaggaagccctgcagttatgaagaggaac
cacaagggagagaccccactgcatctagctgctataaagggagatgtagaggctgtcaag
gaactactggaccagggggctgaccccaacctgaaggataacgctgggtggacacctctg
catgaggcgtgtaatctgggtcacctgggagttgcggaggtcttggtctcaaggggagcc
ctcttgaatacacctggctacgagaatgactctccacttcatgatgctgtgaggaacaga
cacccagccatcgccaaattactcctgcagcttggagccttgcagaacgtacttaatctg
catggtaagcggcctgcagattacgcagtgagtctagagatgctggagattttccaggaa
gcctcagaaggaacccaaaatgctaaaacttcacttagcccctcagccggtctctctgtg
gtgaacgattgtgtgaggaaggatgaaagtatagtgcttctgaccagcaagctgtcacag
gaagaacagcatcaactggtcaaactgggaccgctactgggagggaggatgacggacacc
ttttctggctcagtgagccatgtcgtggtgccagaaggacccatgcccaccacctactct
agccttctgggtctccttgctggctgctgggttgtcaaatacagctgggtggaggcatgt
ctgcaggcaggcaagtggatccccgaaactgagcacgaagcaggagaaggcccccagcgc
agtcgcatcaacagatatagcttgcttccaccactcttcgacggctgtttcttcttcctc
ctgggcacctttaacatgcctaccaaagacgagctcaccaagctgctccgggagggaggt
ggtaaactcctgagccggcagcctaagcctgacagtgatgtgactcaaacccttagtgct
gcagcctatcatgcccttccaggatctgaccaggccctctgcacccagtacatcatcttt
gacccccagggccctcacaagccggcagtggttaggcgtggcaaggtgtggtcagctccc
tccacctggctcatagactgcatcgcagccttctgcctcctccctgtgccagaccctcaa
acattggtctaa
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