Scomber scombrus (Atlantic mackerel): 133992642
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Entry
133992642 CDS
T10651
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a
KO
K06823
collagen type XVIII alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133992642 (col18a1a)
Proteoglycans [BR:
ssco00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
133992642 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133992642 (col18a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133992642
NCBI-ProteinID:
XP_062287311
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Position
13:24488999..24534990
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AA seq
1379 aa
AA seq
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MRIQFGVLFFFTLWVVYCDAWFWTRTDTTTLAPSVEHEGSGSSAGSGELPSDNIGAEIID
EGHGPHKASQTWGGPTDAPRLTAPVPTRQLENQRTSERGRAEIRSHTRKPGNGTSSLEEE
SGVSLLQLIGEPPPNEITQIDGPDNSPAYVFGPDANTGQLARAHLPSPFYRDFALIFNLK
PTSNKGGVIFSVTDAAQQIMYVGVKLSAVVGGNQNVILYYTEPDSQQSYEGARFLVPSLK
DTWTRFAIAVRDDKVMFYLNCDTDPQVVRIERSPDEMELEAGAGVFVGQAGGADPEKFLG
VIGELRVVGDPRAAERHCEEDEDDSDMASGDGSGYAETRPDAKRPTWTTTPASSRPIQQP
PLSKKEEVSVTRETASDSEQVYMESKPRLSGSAGQIGARGEKGDQGDRGEKGDRGPIGAK
GDAGSGSGSSSRGGARGEKGEPGEVGTKGNAGFGYQGKKGEPGIPGPAGPPGPPGPTSDI
STGSDGSVVSRVPGPRGPPGPPGVSGPAGSPGTDGEPGDPGEDGKTGTQGPPGFPGTPGD
PGLKGDKGDRGEGQPGPRGLPGLPGPPGPGVRSTFVDMEGSGFPTSDSSRGLPGPPGPPG
PAGPPGPSTTGTASSSGAFGPPGKDGAPGQPGLPGMPGTDGSPGSSGTKGEKGDSGELGL
PGTIGEKGARGDSGLPGSTGEPGLAGLPGPLGPVGPPGPPGPPGPSYRVGFDDMEGSGGF
LSNGLPGVRGPEGSQGPPGVPGLPGKPGLHGMPGQKGMDGTVGRDGQPGLDGFPGPQGPK
GDIGDKGETGEPGRDGVGLQGPPGPPGPPGKVIYQPDNGGPGLPGQAGFPGPIGPKGDRG
DAGPAGYGLKGEKGEPGLIIGPDGNPLYLDGATGLKGDRGPSGPAGPPGPYGPTGLKGEI
GMPGRPGRPGVNGYKGEKGDPAGGAGFGFPGVPGPPGPPGPPGPAFPINRFNGYDDTSRN
YPGNKGEKGDIGPPGIPGLTPFTDIYTLKNELKGEQGGPGVKGDKGEPGGGYYDPRYGPS
GAPGKPGLPQLYLLPGPPGPPGPPGNSGQSSGVTVLRTYDTMIATARRQEEGSLIYIIDR
ADLYLRVRDGLRQVMLGEYSPFFRDLENEVAEVQPPPVIVAHNGAGHYSKEVSAARPIQP
PPQPPVEPRYPPQYDPRFPDPRHTGHTDGRIATHNDNRHAVTPQRRPSLPVVQPVVHVDS
SASGLHLIALNAPQTGNMRGIRGADFLCFQQARAIGLKGTFRAYLSSKLQDLYTVVRRSD
RDSIPIVNLKDQVLFSSWESIFSDDASRMRENVPLYSFDGRDILRDSAWPEKMIWHGSSK
KGHRQTDHYCETWRAGDRAVTGLASSLQSGHLLQQSSTSCSSSYIVLCIENALTTPYKK
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgaggatccagtttggagttttgtttttttttaccctgtgggtggtctactgtgatgct
tggttctggaccaggactgataccactactttggctccatcagtggaacatgaggggtct
ggtagttcagcaggtagtggagaactgccatcagacaatattggagcagagatcattgat
gaaggacatgggccccataaggcctcacagacttggggtgggcctactgacgctcctcga
ctgaccgctccagtacctacaaggcaactagagaatcaacgtacatcagaaaggggcaga
gcagagattcggtctcacacacgtaaacctggtaatggcacatcttcattagaggaagaa
agtggagtctccctgctgcagctcattggggaaccccctcccaatgagatcacccaaatc
gacgggccagacaacagccctgcctacgtcttcggccccgacgccaacacgggccagctg
gctcgcgcccacctgccgagcccattctaccgagactttgccctcatcttcaacctgaaa
cccacctcaaacaagggaggtgtcatcttctctgtcacagatgcggcacagcagatcatg
tatgtgggtgttaaactgtcagccgtggtgggcggcaaccagaatgtcatcttgtactac
acagagcctgactcgcagcagtcgtacgagggggccaggttcctcgtgccctcgttgaag
gatacctggacccgttttgccatcgctgtgagggatgacaaggtgatgttctacctcaac
tgcgacacagaccctcaggtggtgcgtatagagagatcgccggacgagatggagctggag
gccggcgctggggtctttgtcgggcaagctggaggggccgatcctgagaagttcctgggt
gtgatcggtgagctgagggtggtgggagaccctcgtgctgctgagaggcattgcgaagaa
gatgaagatgactccgatatggcttcaggggacggaagtggctacgcagaaaccagacca
gacgcgaagagacctacgtggacgactactcctgcatcttcccggcccattcagcagcca
ccgttgtccaagaaagaggaagtgtcagttacaagagagacagcaagtgactctgagcag
gtttatatggagtccaagccccgactttctgggtcagcagggcaaattggggctagagga
gaaaaaggtgaccaaggggatagaggagagaaaggagatagaggtccaattggggcgaag
ggagatgcaggttcaggctctggctccagttcacggggtggagcccgtggagagaaggga
gaaccaggggaagtgggaacaaagggcaatgcaggctttggctaccaaggaaagaaagga
gagcccggcattcctgggccagctggtccccctgggccccctggtcctacgtccgatatt
tcaactggcagtgacggctcagttgtttcgagggtccctggaccccgaggaccacctgga
ccaccaggtgtctcaggcccagcgggttcaccaggaactgatggagagccaggtgatcct
ggtgaggatggaaaaactggtactcaaggacctccaggcttcccaggaactccaggtgat
cctggactcaaaggagataagggagaccgtggagagggacaacctggtcccagggggctc
ccaggtcttcccggacccccaggacctggagttagatctacttttgtggacatggaaggc
tcagggttcccaacttcggattctagtcggggactgccaggtcccccaggtccccctggt
cctgccggtcctcctggtccctctacaacaggtacagcatcgagttctggggcatttgga
ccaccaggaaaggacggggcaccaggtcaaccgggtttgcctggtatgccaggtaccgat
ggcagcccaggatcttctggtaccaagggagaaaagggtgattcaggcgagctgggtctt
ccaggaacaattggagaaaagggggctagaggagactctggtttaccgggatcaacagga
gagcctggactggctggtctgcctggaccactgggaccagttgggccacctgggcctcct
ggacctcctggaccaagctatcgtgttggatttgatgacatggagggctctggaggattt
ttgtctaatggacttcctggtgtcagaggaccagaaggaagtcagggtcctcctggcgtg
cctggacttccaggtaaacctggcttgcatggtatgccaggccaaaagggcatggatggt
actgtgggaagagatgggcaaccaggattggatggcttccccggacctcaggggccaaag
ggtgacataggcgacaaaggagagacgggtgaaccaggccgtgatggagtcggcctccaa
ggtccgccaggcccacctggaccgccaggaaaagtcatctaccaacctgacaacggagga
cctggtttacctggtcaagctggattccctggtccgattggaccaaagggtgacagagga
gacgcaggcccggcaggttatggactgaagggtgagaagggtgagccaggcttaataatt
ggtcctgatggaaatcctctgtatttggacggggcaacgggtttgaagggagatagagga
ccttctggaccagctggacctcctggcccgtatggacctactggattaaagggtgaaatt
ggaatgcctggaagacctggtcgccccggagtaaatggatacaagggtgaaaaaggagac
ccagcaggaggcgctggctttggcttcccaggagtccccggccctcccggaccacctgga
cctcctggaccagcctttcctataaatcgcttcaatggctatgatgatacttcgaggaat
tatccaggaaataaaggggagaaaggagatattggacctccagggatcccaggattgacc
ccttttactgatatttacacattgaagaatgaattgaaaggagagcaaggaggcccagga
gtgaagggagacaagggagagcctggtggtggatattatgacccgcgatatggcccatca
ggggctcctggcaaaccaggcctaccgcaattataccttctaccaggacctcccggtcct
cctggaccccctggaaattcaggtcaatcatctggggttacagttttgaggacatatgac
accatgattgctactgccagacgccaagaggagggcagtctcatctacatcatagacagg
gcagacctctatttaagagtccgcgatggactgcgacaagtcatgcttggagagtacagt
cccttcttcagagatctggagaatgaggtggcagaggtccagcctccacctgtcatcgtt
gcccataacggagctggccattattccaaggaagtttctgcggcacgacccatccagcct
ccaccacaaccacctgtagaacccagataccccccacagtatgatcccagattcccagat
cccagacacacgggtcacacagatggaagaatagccacccacaatgataacagacatgct
gtcactccccagcgacgccccagcctccctgtggtgcagcctgtggtgcatgtggactca
tcagcatcaggactacatctcatcgcccttaacgcccctcaaactggtaacatgcgagga
attcgcggggcagatttcctgtgcttccagcaggcccgtgccattggtctgaaaggcacc
ttcagagcttacctgtcctccaagcttcaagacctctacacggtcgtccgcaggtcggac
agggacagcatccccattgtgaatctcaaggatcaagtattgtttagcagttgggagtcc
atcttcagtgacgacgcaagcagaatgagggagaatgtaccactttactcctttgatggc
agagatatcctcagggacagtgcatggccagagaaaatgatctggcatggatcaagcaag
aaaggccaccggcaaacagaccactactgcgaaacatggcgggcaggcgaccgcgctgtg
actggtctggcatcatcactacagagcggccacctcctgcagcaaagctccactagctgc
tccagctcctacatcgtcctctgcatcgagaacgccttaacaacaccctacaaaaaataa
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