Scomber scombrus (Atlantic mackerel): 133992687
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Entry
133992687 CDS
T10651
Symbol
pou2f1b
Name
(RefSeq) POU domain, class 2, transcription factor 1b isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133992687 (pou2f1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133992687 (pou2f1b)
03021 Transcription machinery [BR:
ssco03021
]
133992687 (pou2f1b)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
133992687 (pou2f1b)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
133992687 (pou2f1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
T6_Ig_like
Motif
Other DBs
NCBI-GeneID:
133992687
NCBI-ProteinID:
XP_062287360
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All DBs
Position
13:complement(11119187..11139877)
Genome browser
AA seq
704 aa
AA seq
DB search
MADGGAASQDESSGPDAKVNNQSETTKCAMESGDGNTGIQINGLDFQRQTVPTTSAITNA
HAQALLQQLTLTPAHQQLLIQQAQAQLLAAAVQHSANQQNSTTGASISASAATPITQLPL
SQPIQIASENCLTSISDDCLTLGFYLKTWMQLQQQNLSLPQFVLVQPGHPIATPMPTTQF
IISQTPHTQAGILQSPSLLTQLPQPTNLSQPNLLPSQPSINLTTQPATPTRTTAATPIQT
PPKRLDTPTLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF
EALNLSFKNMCKLKPLLEKWLNDAVCAENLTSDQGLSSPSALGSPGMGIEGINRRRKKRT
SIETNIRVALEKSFLEQNQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINPPSSG
NSGGCHTPIKTIFTPSSPLVASTASLVSSPTINTPTTLTVNPVMPLTSTSVSNLSFTGTT
VGPTNTASVISTAPMVTTVTSSPSLSPSPTSIHCTTAESKAGIHAHTIVTQAPTSIATSL
GTGQVMVTSGLSAALQGAQLPTSIAAMAAAAGLNPGLMASSQFAPGGALLSLAPGGLGSA
LSPALMSNSTLATLQALASGGAIPITSLDGGNLLFANTSAGNTPNLVTTPLFLNPQNLSL
LTSNPVSLVSHGAGGLQLTADAHQATTAAVPVQASTITTASKAQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaggagcagcgagtcaagatgagagttcaggaccagatgctaaagtgaat
aatcagtcagaaactactaaatgtgcaatggaaagtggtgacgggaacaccggaatccaa
atcaatggattggactttcagaggcagacggtgccaaccacaagtgcaatcactaatgca
catgcacaagccctcctccaacagttgaccctgaccccagcgcatcagcagctgttgatc
cagcaggcacaagctcagctcctggctgcagccgtgcagcattcagctaaccagcagaac
agcaccactggggccagtatctcagcctctgcagccacacccatcacccagctacccctg
tcacagccaatccagattgcttctgagaattgcttgacttccatatcagacgactgcctg
acacttggtttctacttaaagacatggatgcagctacagcagcagaatcttagcctgcct
cagtttgtccttgtgcagcccggccacccgatcgccacaccaatgccgaccacccagttc
atcatctcacagacaccgcacacccaagcaggcatattacaatccccgagtcttctaact
caactacctcaaccaaccaacctaagccaacctaacctcctgccgagtcaaccaagcatc
aacctcacaactcagcctgcaaccccaacccgcacaacagcagccacacctattcagaca
ccacccaaacggttggatacccccactctggaggagcctagtgatctggaggagctggag
cagtttgccaagaccttcaaacagaggcggatcaaactgggcttcacgcagggcgacgtt
ggcctggccatggggaagctgtacggaaacgacttcagccaaactaccatctctcgcttt
gaggccttgaatctgagctttaagaacatgtgcaaactcaagccattgctggaaaagtgg
ctcaatgatgcagtttgtgcagagaacctgacatctgaccagggcctgtccagccccagt
gcactcggctccccgggcatgggcatagaggggatcaaccgcagacgaaagaagaggacc
agtattgagaccaacatccgagtggccttagaaaagagctttcttgagcagaaccaaaaa
cctacctctgaggagatcaccatgatcgctgaccagctcaacatggagaaggaggtgatt
cgggtctggttctgcaatcgccggcagaaagagaagaggattaaccccccgagtagtggc
aacagcggaggatgccacacccccatcaaaaccatctttacacccagtagtcctttggtg
gccagcacggcgagccttgtgagcagtccaactattaacacacccaccactctgactgta
aatccagtgatgcctctcaccagcaccagcgtctccaatttgtctttcacagggacgaca
gttggacccacaaacactgcatctgtcatatccactgcacctatggttaccacagtaacc
agttctccatcattaagcccgtcaccaacgagtattcactgtacgaccgcagagagtaaa
gctggcattcatgcgcacaccatcgtcacccaggccccaacatccatagccacctcttta
gggacaggtcaggtgatggtgacttcagggctgtctgcagcactgcagggtgcccagtta
cccaccagcattgctgctatggctgctgccgcagggctcaacccaggactgatggcctcc
tcccagttcgccccaggtggggccctgctcagtctggctcctggtggccttggcagcgcg
ctgagtcctgccctcatgagcaacagcaccctggccaccctacaagctctggcatcgggt
ggggcaatccccatcacctctctggatggtggtaacctgctgtttgccaacacctctgct
ggtaacacacccaacctggtgaccacgccgctcttcctgaacccccagaacctgtcgctg
ctcaccagcaaccccgtcagcctggtgtcgcacggggcgggggggctgcagctcactgct
gatgctcatcaagccaccacggctgctgtgcctgtgcaagcctcgaccattaccactgcc
tccaaggctcagtga
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