Scomber scombrus (Atlantic mackerel): 133992714
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Entry
133992714 CDS
T10651
Symbol
tbc1d4
Name
(RefSeq) TBC1 domain family member 4 isoform X1
KO
K17902
TBC1 domain family member 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133992714 (tbc1d4)
Membrane trafficking [BR:
ssco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
133992714 (tbc1d4)
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
133992714 (tbc1d4)
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Rab associated proteins
133992714 (tbc1d4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
RabGap-TBC_2
DUF3350
PID
PTB
DUF4249
FAN1_HTH
Silic_transp
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
133992714
NCBI-ProteinID:
XP_062287400
LinkDB
All DBs
Position
13:complement(9351192..9380453)
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AA seq
1249 aa
AA seq
DB search
MECQSEREISPPKSDRRFALTYIGWSSLDRRTTLPMLPWLVAEIRRRSEKGDCGPAVQPR
EVQLVLNAPFVRCVPSNSNNCSVFIFEHKAQLISRFLHNSNDLTYFAYLLKGQPDNPESE
MSCHVFKANDPNQVPEVISSIRQASKSALKEDTKPKQEADEAFYNSQKFEVLYCGKVTVG
HKKASSTLIDDCIDKFRQHEIERKRLRLLNGQRGSTENASVEFIVGGDSDPLSSVLSESL
EDPESPGVEDLSGGKDLSSSASQSSLRGTFPECILEDSGFEEPQEFRTRCSSLAGSLQRK
PGEGVMMAPTRRRHSSAPNNVQPSDTDKNRTMLFQVGRFEINLISPDSKTVVLEKNFKDI
SSCCQGIKQTDHFGFICRDPSESGSNQYVCFVFQCASESLVDEVMLTLKQAFTTAAALQS
NKTPIQLCEACPMHDLHKLCERIEGLYPPRAKLAIQKYLSQLTDNEQVETFERVQKLKPA
SDQEENELVILHLRQLCETKQKSHLHIGEVPQNAATSPAPADGAATSSRFKLDILKNKAR
TSLTSSLENIFARGASRMRGRLGSMGSMSSFERQDEESPNHSPPSSPPAFSDDDPEAGPQ
FRRRAHTFSHPPVKKRISFEGQPAKQAPLRRQQSVNPELLGSSPVAVSRTRSVSESESSF
SLPSSFSAPSFLKTFYQGSLGSLSSLADSGSLKSNGEGRKRTLSTCSSDSVSGGLPPTPR
RVSWRQKIFLRVASPMNKPSASMQHPEHSDVRELLPLSPRASLDVLGHLLPRTGDHLSGE
RPKRTATEYRALWKNAIRQQILLLRMEKENQRLEEASRDELHIRKMKLNYQEVGQCSKDA
QALWERKLTAPGRTTVPQDQEEMYRALCQGIPKSRRGEVWLLLSHQHRLCHRLPPRQHAP
DTPYQDLLKQLTAQQHAILVDLGRTFPTHQYFSAQLGAGQLSLYNLLKAYSLLDTEVGYC
QGISFVAGVLLLHMSEDQAFDMLKFFMYDLGIRRQYRPDMVSLQVQMYQLSRLLHDYHRE
LYNHFEEHEICPSLYAAPWFLTLFASQFPLSFVSRIFDFIFVQGTEVIFKVALCLLSSHE
GEIVECDTFESIVDYLKTTLPNLSQTQMEQTMSKVMEMDISKQLHAYEVEYHVLQDEMLD
AGPLPDDSDRLDKLEKTNAQLKKQNMDLLEKLQAARQKIQTLETSVENFLSRESKMKHMI
RSLEQERAAYQKTIERMRSCLPPDALTDVEMTQIKTGPNGKAKTAAKKP
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtcagtccgagagggagatcagccctccgaagtcagacaggaggttcgcgctg
acttacatcggttggtcctcgctggacaggaggaccacgttacccatgctgccgtggctg
gtggctgagatccggaggagaagcgagaagggcgactgtggccccgcggtgcaaccgaga
gaagttcagctggtcctcaacgcccccttcgtccgatgcgtcccctccaacagcaacaac
tgctccgtcttcatattcgagcacaaagcacagctcatctctcgtttcctgcacaacagc
aatgacctcacctattttgcctatctcctgaagggccagccagacaaccccgagtctgag
atgtcctgtcacgtctttaaggctaatgaccccaaccaggttcctgaggtgatcagcagt
attcgccaagcgtccaaatccgccctaaaggaagacaccaagcctaaacaggaagctgac
gaggccttctacaactcccagaagtttgaagtgctttattgtggcaaggtgactgtcggg
cataaaaaggcttcgtccaccctcatcgatgactgtatcgataagtttcgccagcatgag
atcgagcgtaagcgcctgcgcctgctcaacggccagcgggggtccacagaaaatgcctct
gtggagttcatcgttggaggagacagcgatccactctcctctgttctgagtgagagttta
gaagacccggaaagccctggagtggaggacctgagcggaggtaaagacctctccagcagt
gccagtcagagcagcttgagaggaacgttcccagagtgcatcctggaggattctggattt
gaggagccgcaggagtttcgtacccgctgcagcagcctggcgggtagtcttcagaggaag
cctggggaaggtgtcatgatggctcccacacgccgcagacactctagtgcgccaaacaac
gtccagccatctgatacagacaagaaccgcaccatgctcttccaggttgggcgttttgaa
ataaacctcataagcccagacagtaaaacagtggtgctggagaagaacttcaaagatatc
tcatcttgctgtcagggtatcaagcagactgaccattttggattcatctgtcgggaccca
tcagagtctggttccaatcagtatgtgtgcttcgttttccaatgtgccagtgagtctttg
gtggatgaggtgatgctgaccctgaagcaggccttcactacagcagcagccttacaaagc
aacaagaccccgatccagctatgtgaagcatgccctatgcatgacctgcacaagctctgc
gagcggattgaaggtctctacccacccagagcaaagctagccatccaaaaatatctctcc
cagctgactgacaatgagcaggtggagacttttgagcgagttcagaaattgaaaccagct
tcagaccaagaagagaatgagctggtgattctccatcttagacagctgtgtgaaaccaaa
cagaagtcccacctccacattggagaggtccctcagaatgcagccaccagcccagcacca
gcagacggtgcagccaccagcagtcgcttcaaacttgatattctcaagaataaagctcgc
acctccctcaccagctctctggagaacatctttgcaaggggggccagccggatgcggggc
cgcttaggaagcatgggaagcatgagcagttttgaaagacaggatgaggaatctcccaat
cactcccctccaagttcccctcccgcttttagtgacgacgacccggaagctggcccacag
ttccgtcggcgtgctcacaccttcagccatccacctgtgaagaaacgcatctccttcgag
ggtcagcctgccaaacaggctcctctgcgcagacaacagtctgttaacccagaactgctg
gggagcagtcctgtggctgtctcgagaacgcgcagtgtttcggagagcgagtcctccttc
agcctcccctcctccttctctgccccaagtttcctgaaaaccttttaccagggctcactg
ggttccctgagctccctggcagacagtgggagcctcaagagcaatggggaaggcaggaaa
aggacactgtctacctgcagcagtgactctgtgagtggaggtctacccccaaccccacgc
agggtctcctggagacagaagatcttcctgagggtcgcttcgcccatgaacaagccttct
gcatccatgcagcacccagagcactctgatgtccgggagctgttgcctctctctcctcgt
gcaagtctggatgtgttggggcatctgctgcccaggacaggtgaccacctgtctggggag
aggcccaagaggacggcgactgagtaccgggcgctctggaaaaatgccatccgtcagcag
atcctcctgctgcgcatggaaaaggagaaccagaggctggaggaagcgagccgagatgag
ctgcacattcgcaagatgaagctgaactaccaggaagtgggccagtgctccaaagatgcg
caggcattgtgggagagaaaactgacagccccaggcagaacgacagtcccacaagaccag
gaggagatgtaccgtgcactctgccaaggtattcccaaaagcaggcgtggggaggtctgg
ttgctgctttcccatcagcaccggctgtgtcacagattgcccccccgccagcacgccccg
gacaccccctaccaagatctgctcaagcagctcaccgcacagcagcatgctattctggtg
gatctaggccggaccttccccacccaccagtacttctcagctcagctgggcgccgggcag
ctttccctctacaacctcctgaaagcctactctctgctggatacagaggtcggctactgc
cagggtatcagctttgtggctggcgtgctgctgctccacatgagcgaagatcaggccttt
gacatgctgaagttcttcatgtatgacctcggcatcagacgccagtacagaccagacatg
gtctccctgcaggttcagatgtaccagctctctaggctgttacacgactaccaccgagag
ttgtacaatcacttcgaggaacacgagatctgcccgagcctctatgctgcaccgtggttc
ctcactctcttcgcctctcagttccccctcagctttgtgtcgcgtatctttgactttata
tttgtccaggggactgaagtaatcttcaaagtggccctctgtctgctgagcagccatgag
ggagagatagtggagtgtgacacctttgagagcattgtggactatcttaaaactacactt
cccaaccttagtcagacacagatggagcagaccatgtcaaaggtaatggagatggacatc
tccaagcagctgcatgcgtacgaagtggagtaccatgtcctgcaggatgagatgctagat
gctgggcctctgcctgatgactctgaccggctggataaactagagaagacaaacgcacag
ttgaagaaacagaatatggacctgttggaaaaacttcaggctgcacggcagaagattcag
acgctggagacaagcgtggagaacttcctttctcgggagagcaaaatgaagcacatgatt
cgctctctggagcaagagagggcagcttaccagaagaccattgaacgcatgcgctcgtgc
cttccccctgacgccctgacagatgtggagatgacccagatcaaaacaggacccaacggg
aaagccaaaactgcagccaagaagccctga
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