Scomber scombrus (Atlantic mackerel): 133992735
Help
Entry
133992735 CDS
T10651
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a
KO
K16578
CLIP-associating protein 1/2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133992735 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133992735 (clasp1a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
133992735 (clasp1a)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
133992735 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
HEAT_EF3_N
XMAP215_CLASP_TOG
CEP104-like_TOG
HEAT
TOR1L1_N
HEAT_EZ
Sec7-like_HUS
Cnd1
ParcG
Dopey_N
HEAT_DAAF5
MMS19_C
Paxt-1_C
TAN
Motif
Other DBs
NCBI-GeneID:
133992735
NCBI-ProteinID:
XP_062287437
LinkDB
All DBs
Position
13:27190937..27310681
Genome browser
AA seq
1516 aa
AA seq
DB search
MMEPSMENCLTQVLQKDMGRRLQVGQEIIDYILDKEKSYDLEQDQTALDKMVDGIASSWV
NCSNFKVALLGLDLLSALVTRLQERFRAQVGTVLPSLIDRLGDSKDQVREQDQTLLLKIM
EQAASPQYVWDRMLGGFKHKNNRTREGVCLCLIATLNTYGAQGLTLSKIVPHICNLLGDP
TSQVRDGAMSCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSKFDEVQRSGNMISSSGSD
KNFEDEDSVDGGRSSSSSSSKAPPSGRRTVISSVRRPSATSTVKITSKEAAAGAVDEEDF
IKAFEDVPTVQLYSNREFEDQMSKTREVLSDDKHDWEHRVVALKKVRSLLVAGATEYEGF
PQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSSLLGNKFDHGAESVMPTLLNLVPNSA
KVMATSGVATIRLILRNTHYPRLIPIITSNCTSKSVAVRRRCYEFLDLMLQEWHTNTLER
HVAVLTETIKKGIHDADSEARSIARKCYWSFHGHYSREAEHLFQALESTYQKALQSHLKS
SDSIVSLPQSDRSSSSSQESLNRPLSVKSVLGGSMTRSKLVSSRVSSTPGSLQRSRSDID
VNAASSAKSRLSTVPASSPFSSAAALPPGSYASLGRVRTRRQSSGSVGGANTSVVDSRGR
SRAKVVSQSQPGSRSSSPGKLLGHSSYGRIPRATAPPNTTPADKRTRIPRSQGCSRETSP
SRMGLARSRIPRPSMSQGCSRDTSRESSRDTSPARGFTPLDRYGLIHQARISASVNAMRV
LNTGTEVEAAVADALLLGDSRNKRKPLRRRYESPGMYSDDDANSDASSACSERSYGSRNG
GIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRILSRVELKRLCEIFTRMF
ADPHSKRVFSMFLETLVDFVTVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDI
TRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSETRLAVS
RIITWTTEPKSSDVRKAAQVVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSS
NTSSSSVGSPSNTIGRTPQRHTPSRTSPLTSPTNCSHGGLSPSMMEYDTENMNSEEIYSS
LRGVTEAIQSFSYRSQEDLNEPIRREGKRDDAAGREGVASSPGSDARLGLDVVEGGRTAL
DNKTSLLNTPSARSFTGPRGREFAPYGYGETICSYDKSALKEAVFDDDVEQFRDCRRQES
GENKMTIPKVFGPVGQDHSDMVADLLKELSNHNERTEERKGALVELLKITREDSLAVWDE
HFKTILLLLLETLGDKDHTIRALALRVLKEILRNQPARFKNYAELTIMKTLEAHKDSHKE
VVRAAEEAASTLAGSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKVIERIAKDSLLQLL
PDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDLKPHLAQLTGSKMKLLNLYIKRAQ
TTNSNSSSSSDVSSHS
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcccagcatggagaactgcctgacccaggtcctgcagaaggacatgggccga
cggctgcaggtgggtcaggagatcatcgactacatcctggataaagagaagtcctacgac
ctggagcaggatcagaccgctctggataagatggtggacggcatcgccagctcgtgggtc
aactgcagcaacttcaaggtggctctgctcggcttggacctcttatctgccttagtgacg
aggttacaggagagattcagggctcaggtgggaacagtcctgccgagccttatcgatcga
ttgggagattccaaagaccaagtacgagaacaagaccaaaccctgctgctaaagatcatg
gagcaagccgcctcgccacagtacgtgtgggaccggatgctgggaggcttcaaacataag
aacaacaggaccagagaaggagtgtgcctttgcctcatcgccacactgaacacgtacgga
gctcaaggcctgactctcagtaaaattgtcccccacatatgtaacctgctgggagaccca
acgagtcaggtgcgtgacggagccatgagctgcttggtggagatctacagacatgtgggt
gagagggtgaggatggatctcagcaagaagggcctgccgcagtcacggttgaatgtaatc
ttcagcaaattcgatgaagtccaaagatcggggaacatgatctcatcctctggctcagat
aagaactttgaagatgaggactctgtggatggaggccggtcctcctcctcctcgtcctct
aaagctccccctagtggaaggaggactgtaatcagctctgtgagaagaccaagtgcaacc
agcacagtgaagatcacaagtaaagaagccgcggccggagctgtagatgaagaggatttc
atcaaagcctttgaagacgtgcccacagtccagctctactctaacagagagttcgaggac
cagatgtccaagaccagagaagttctgtctgatgataaacacgactgggagcaccgagtg
gtagcactgaagaaggtgcgttccctcttggtagccggagctacagagtatgaaggtttt
cctcagcagctgcggctcctcgaggctccgctcaagctttctgctaaagacctgcgatcc
caggtggtccgagaggcctgcatcacactgggatatttgtcgtcactgctgggtaacaag
ttcgaccacggagcggagagcgtcatgcccacactgctgaacctcgtgcccaacagtgcc
aaagtcatggccacgtctggagtggcaaccatccgcctcatcctcaggaatacacactac
ccacgtctcatccccatcatcaccagtaactgcacgtccaaatcagtagcagtcagacga
cgctgttatgagttcttagacctcatgctacaagagtggcacactaatacactggaaaga
cacgtggctgttctgactgaaaccatcaagaaaggcatacacgatgcagactcagaggcc
agatccatcgcaagaaagtgctattggagtttccacggtcactacagccgggaggcagag
catctgttccaggcgctggagtccacctatcagaaggctctccagtctcacctgaagagc
tctgacagcattgtgtctctaccgcagtctgaccgctcctcctcgtcttcccaggagagt
ctgaatcgtccgctgtctgtgaagagcgtcctgggaggaagcatgacaaggagtaagctg
gtgagctccagggtgtccagcactcccggttccctccagcgttcccgtagcgacatcgac
gtcaacgccgcctccagcgctaagtcacgtctgtccaccgtccccgcctcctcgccgttc
agctcggccgccgctctccctccaggatcctacgcctcattaggtcgtgtccgcactaga
agacagagctcgggcagcgtcggtggagccaacacctcggtggtggacagcagggggcgc
agccgagccaaagtggtctcccagtcccagcccggcagtcgctccagctctcctggcaag
ctgctcggccacagcagctacggccgcatccctcgagccacggcgccgcctaacaccacg
ccggccgacaagcgcaccaggatcccccgaagccaagggtgcagccgcgagactagcccc
agcagaatgggcctcgcccggagccgcattccccgccccagcatgagtcagggttgcagt
cgcgacaccagtcgcgagagcagccgcgacaccagccccgctcggggctttactcctctg
gatcggtacggtttgattcaccaagccagaatctctgcatcagttaacgccatgagggtc
cttaacacgggcaccgaggtggaggctgctgtagctgatgctctgctattaggagactcc
aggaataagaggaagcctttgagacggaggtatgaatccccggggatgtactctgacgac
gacgccaacagcgacgcgtccagcgcctgctcggagcgctcgtacggctccaggaacggc
ggcatccctcattacctgcgtcagacggaggacgtggccgaggtcctgaaccactgcgcc
agctccaactggtcagagaggaaggaaggtctgctgggtctgcagaatctcctcaagagc
caaagaatactgagccgagtggagctgaagagactctgtgagatcttcaccaggatgttt
gcagatccacacagcaagagagtgttcagcatgttcttggagactctcgtggacttcgtc
acggtgcacagagaggacctgcaggactggcttttcgtcctgctcacccagctgctgaag
aagatgggcgcagacctgctgggctcagtccaggccaaagtccagaaggccctggatatc
acaagggattccttcccattcgaccaacagttcaacatcctgatgaggtttattgtggat
cagactcagactccaaacctcaaggtcaaagtggccattttgaagtacatcgagtcgttg
gctcggcagatggacccgactgactttgtgaactccagcgagactcgactggccgtgtct
cgtatcatcacctggacgactgaacccaaaagctctgacgtcaggaaggcggcccaggtg
gtgctgatctccttgtttgagctcaacacccccgagttcaccatgctgctgggagctctg
cccaaaaccttccaggacggagccaccaagctgctgcacaaccacctgaagaactccagt
aacaccagcagcagcagcgtggggtcgcctagcaacaccatcggccgaacgcctcagcgt
cacactcccagcaggacgagcccgctcacgtctccgaccaactgttcacacggaggactt
tcaccaagcatgatggagtacgacacagagaatatgaactcggaggagatttacagctcg
ctgcgtggcgtcacagaagccattcagagcttcagctaccgcagccaggaagacctgaac
gagccaatcagacgggagggaaagagggacgacgctgccggtagagaaggcgtagcgtcg
tctcccggctctgatgcccgcctgggtttggatgtggtggaagggggtcgcaccgccttg
gacaacaagacttcgctgctcaacacgccgtcagcacgctccttcacagggccgcgcggt
cgagagttcgctccttacggctacggagaaaccatctgcagctacgataagagcgccctg
aaggaagccgtgttcgatgatgacgtggagcagttcagagactgccgacgtcaggaaagt
ggtgaaaacaagatgacgatccccaaggtctttggtcctgtcggacaggatcactcagac
atggtggccgacctgcttaaggaactgtccaatcacaacgagcgtacagaggagcgtaaa
ggcgccttggtggagctgctgaagatcacacgagaagacagcctggccgtgtgggacgaa
cactttaaaactatcctcctcctcctgctggagacactgggtgacaaagatcacaccatc
cgagctctggccttacgcgtgctgaaggagattttaaggaaccagccggcccgcttcaaa
aactacgccgagctcaccatcatgaagaccctggaggctcacaaagactctcacaaggag
gtggttcgtgcagctgaggaggcggcgtccactctggccggctccatccacccagagcag
tgcatcaaggtgctctgccctatcgtgcagacggccgattaccccatcaacctggccgcc
atcaagatgcaaaccaaagtcattgaacgcatcgccaaggactctctcctgcagctgctg
ccagacatcatcccaggactcctgcagggctatgacaacacagagagcagcgttcgcaag
gccagtgtgttctgtctggtggctatctactctgtgattggagaggacctcaaaccccac
ctggcacagctcacgggcagcaagatgaagttattgaacctctacatcaagcgagcccag
acgaccaacagcaatagcagcagctcctcggacgtctcctctcacagttaa
DBGET
integrated database retrieval system
