Scomber scombrus (Atlantic mackerel): 133992745
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Entry
133992745 CDS
T10651
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133992745 (sox1a)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133992745 (sox1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
133992745
NCBI-ProteinID:
XP_062287447
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All DBs
Position
13:complement(10471030..10472064)
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AA seq
344 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNTGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPSGGGGVGLGVGMSSSGVGQRLESPGGHGGSASSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSGYGGITYTQHQGSGVSSSAAMGTLGSLVKSEPSVSPPVSSTHSRGPCPGDLR
EMISMYLPTGEPGDPSMQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgaccttcattcccccggcccccaaacgaatacgaac
acggggcaaacggggccgaacagcgggtccaaagcgaatcaggagcgggtgaagagaccg
atgaacgcgttcatggtgtggtcccgtgggcagcggagaaagatggcacaagagaaccca
aaaatgcacaactctgagatcagcaagcggcttggtgccgagtggaaggtgatgtccgaa
gctgagaagcgccctttcatcgacgaggcgaaacggttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagaaggaagaccaagacgctgctgaaaaaggacaaa
tattcccttgctggtggactgctttctggtcccagtgggggcggtggagttggtttaggg
gtcggcatgagttcatctggggtcgggcagaggttagagagccccgggggtcacggaggc
tccgccagctccggctatgcgcacatgaacggctgggcaaacggtgcgtactcggggcag
gtggctgcagccgcggcagccgctgcgatgatgcaggaggctcagctagcctacagccag
cacccggggagcggggcgcaccaccaccaccattcacaccaccatcactcacacaacccc
cagcccatgcaccgctacgatatgacagccctgcagtacagccccatctcgaactctcag
agctacatgaacgcttctccatccggctacggcgggatcacctacacacagcaccagggc
tccggcgtctcctcctcagctgccatggggacgttagggtcgctggtgaagtcagagccg
agtgtaagccctcccgtcagcagcacacactcacggggtccttgccccggagacttgaga
gagatgataagcatgtatttaccgaccggagagccgggggacccgtcaatgcaaagtaga
ctccatgccttgccgcaacattaccagagcgccacggctggagtgaacgggacggtccct
ctaacacacatttag
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integrated database retrieval system
