| Entry |
|
|---|
| Symbol |
prpf40a
|
|---|
| Name |
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
|
|---|
| KO |
| K12821 | pre-mRNA-processing factor 40 |
|
|---|
| Organism |
ssco Scomber scombrus (Atlantic mackerel)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:ssco00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133992871 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:ssco03041]
133992871 (prpf40a)
Spliceosome [BR:ssco03041]
Complex A
U1 snRNP components
U1 related factors
133992871 (prpf40a)
Complex B
133992871 (prpf40a)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
13:complement(14227443..14242993)
|
|---|
| AA seq |
854 aa
MPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGIIPPGMMPPMGAPPMGQMPGMMPP
MMPGMMMPPRMPAAAVQPTGPPGVESTAAAPGTTSATNGSPQEDQPKKKSLWTEHKSLDG
KTYYYNTETKQSTWEKPEELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGMAEAVAPNSTLAPAVQADTTATMATVMEAETATAVSEEHLSQAAVH
HTAETADAPVPSAESTVATEATVSIEVAKEERPELQKKTYKWNTKEEAKQAFKELLKEKG
VSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQ
RFLENHEKMTSTTRYKKAEQMFSEQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRK
RNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRAL
EKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTLSSDIRFAN
MLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEVNTSFDDFGSVISSDKR
ATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKNMLKQATPPLEPETTWE
GVRERFLKESAFEDVTLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRS
RSGSESEDEEYHKKKKRSQSKSPSERSSSGESERSYKKSKKHKKKGKKRRHKSASPDTDN
EKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQKSPKRKAAKEEGGWDTSGSELSEGEL
EKRRRTLLEQLDAP |
|---|
| NT seq |
2565 nt +upstreamnt +downstreamnt
atgcctcccccctttatgggaccacctggaataccgcctcatttccctcccatgggaatg
cctcctatgggacagcgacctcccagcatgactccgatgcctcctggtataattccccct
ggtatgatgccgccaatgggtgcacccccaatgggacagatgccaggcatgatgccaccg
atgatgccagggatgatgatgccccctcgcatgccagctgcggctgtacaaccgacggga
ccgcccggtgttgaatccacagcagctgcacctggaacaactagtgccacgaatggatct
ccacaggaagaccagccaaagaagaagtccctgtggaccgaacacaaatcactggatgga
aagacctattattacaatacagagaccaagcagtccacatgggagaaaccagaagaactc
aaatctcctgcagaacaaatgctgtctaaatgtccttggaaagagtataagtcagacaca
gggaagccttactattacaactctcagacgaaggagtccagatggacgaaacccaaagag
ctggaagatctggaagccatgatcaaagcagaggagaatggaatggcagaggcagtggcc
cccaactccactttagctcctgctgtgcaagcagataccacagccactatggcgaccgta
atggaggcagaaactgcaacagcggtctcagaggaacacctgtcccaggcggccgtgcat
cacacagctgagactgcagatgcacctgtgccttcagcagagagcacagtcgccacagag
gctacagtcagtattgaagtcgcaaaggaagagcggccagaacttcagaagaagacttac
aaatggaacacgaaagaggaggccaagcaagctttcaaagagctgctgaaggagaagggt
gtatcctcaaactcctcttgggaacaggccatgaaaatgatcatcaatgatcctcgctat
agtgcactccccaagctgagtgagaagaagcaggcatttaatgcctacaaagtccaaaca
gagaaggaagaaaaggaggaggccagaattaagtacaaggagtccaaagaaacctttcag
aggttcttggagaaccatgagaagatgacatctaccaccagatacaagaaagcagaacag
atgtttagtgagcaggaggtgtggagctgcgttccagagagggacaggctggagatctat
gaagatgtgctgttctacctagctaagaaagagaaggaacaagccaagcagctgaggaag
aggaactgggaagctctgaagaacattcttgacaacatggccaatgtcacctaccgcacc
acctggtcagaggcccagcagtacctgctagacaacccaacctttgcagaagatgaagag
ctacagaatatggacaaagaggatgccctcatttgttttgaggagcacatccgggcactg
gagaaggaagaggaggaagagaaacagaagactcttctcagggagaggagaagacaacgc
aagaacagagaggccttccagaaatttctagatgagctccacgaccatggccagcttcac
tccatgtctgcctggatggagatgtacccgaccctgagctcagacatccgctttgccaac
atgctgggacagccgggttccactccccttgatctgttcaaattttatgtggaggactta
aaggcccgctaccatgatgaaaagaggatcattaaagatattcttaaggataaaggcttc
ctggttgaagtgaacaccagctttgatgactttggatcagtcatcagctcagataagaga
gccactacactggatgcaggaaacataaagctggccttcaacagtttactggagaaggct
gaagccagagagagagagcgagagaaggaggaggcgaggaagatgaaaaggaaagaagca
gccttcaagaacatgctgaagcaggccacaccaccgctggagccagagactacatgggag
ggagtcagagagagattcttaaaggagtctgccttcgaagacgtgaccctggagtcagag
aggaaacggatattcaaagacttcatgcatgtcttggagcatgaatgccaacatcaccac
tccaagacaaagaagcactcaaagaagtctaagaagcatcacaggaaacgatcccgctct
cgatcaggctcagagtctgaggatgaggaataccacaagaagaagaagaggtcgcagtcc
aaatctccttctgaacgctcctccagtggagaatctgagagaagctataagaaatccaag
aagcacaagaagaagggaaagaagagacgccacaagtctgcatcaccagacactgacaac
gagaagaaaggaagagagcgtgatggaaagcgtgaaaaggacctagagaaagataaagag
aacgacaagtctcgggggaaatctcgctctgactctaaacagaagtctcctaaaaggaaa
gcggccaaagaagagggtggctgggatacgtcgggcagtgagctgagtgagggagagctg
gagaaaagaagaagaactttactggaacagctggatgcaccttga |
|---|
