Scomber scombrus (Atlantic mackerel): 133992884
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Entry
133992884 CDS
T10651
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133992884 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133992884 (mid1)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133992884 (mid1)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
133992884 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
PRY
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
133992884
NCBI-ProteinID:
XP_062287648
LinkDB
All DBs
Position
13:13026193..13045767
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGPNSPNETRRERSVPDSKAMTSPSDRVQ
CQFCEQDPPQDAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYDKLKQALDSNLSSLLKRTSELE
TLMGKLIQTCQHVEVNATRQENKLVEECDLLINIIQQRRQIIATKIKEGKAVRLRKLAQQ
IASCKQCIERSSSLITQADQTLKETDHTRFLQTAKSICERVSMATASSQILLPEINLNDT
FDTFALDFTREKKLLESLDYLTAPNPPAIREELCTASYDTITVHWTSDDEFSVVSYELQY
AIFTSQSNVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYIFIVKAINQAGNRSSEPGK
LKTNSQPFKLDPKSAHRKLRLSHDNLTVERDETSSKKSHSQDRFSSHSSYGVTGNVYIDS
GRHYWEALIGGSTWFAVGIAYKSAPKHEWVGKNSASWVLSRCNNSWVVRHNSKEMPIEPS
PHLRRLGILLDYDSGSLSFYDAVGSQHLHTFDVTFAQPVCPVFNVWNRCVTILTGLPIPD
HLEGRDYNN
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattggagtcggagctgacctgcccaatctgtctggagctttttgaggacccg
ctgctcttgccctgtgcacacagcctttgtttcaactgtgcccatcgtattttagtctcc
cactgcacgcccagtgagccaattcagtccatcagcgcctttcagtgcccgacctgtcgc
tatgtcatcaccctcaaccagaggggcctagagggactcaaacgcaacgtaactctgcag
aatatcatcgatcgctaccagaaggcttctctaagtggacctaattctcctaacgagact
cggcgtgagcgatccgtccccgacagcaaagccatgacatctcccagcgacagggtgcag
tgtcagttctgtgagcaggaccctccacaggatgctgtgaagacctgcgtgacctgcgag
gtgtcttactgtgaagagtgtctcaaagccacccatccaaacaagaagcctttcacgggc
caccgtctaatcgagccactgctggactcccatctgcgtgggctcatgtgtctggagcat
gaggatgagaaggtcaacatgtactgtgtgacagatgaacagttgatctgtgccttgtgt
aagctggttggccgacaccgggaccaccaggtagcagccctcagtgaccgatatgacaaa
ctcaagcaagccttggattccaacctcagcagtctactcaagaggaccagtgagttggaa
actctgatgggcaaacttatccaaacctgccaacacgtagaggtaaatgcaacgagacaa
gaaaacaagctggttgaagagtgtgacctgctgattaatatcatccagcagcgaagacaa
atcatagcgaccaagataaaggagggaaaggctgtgcgactgaggaaactagcccagcag
atagccagctgcaagcagtgcattgagagatcttcctccctcatcactcaggccgaccaa
accctcaaggagacagaccacactcggttccttcagacagctaaaagcatctgtgagaga
gtctctatggcaacggcatcttctcaaatcctgttacctgaaataaacttaaatgacacc
tttgatacttttgctttggacttcacgagggagaagaaattgctagaaagtttggattac
ctcacagcgccaaatccaccagcaatccgtgaggaattgtgcacggcttcgtatgacacg
attacagttcattggacatctgatgatgagttctctgttgtgtcatatgaacttcagtac
gccatcttcaccagccagtctaatgttgtcagtttgtgtaactctgctgatagctggatg
atagtaccaaacatcaagcaaaatcactacactgtgcacgggctccagtgtggcaccaag
tacattttcatagtgaaggccataaaccaggctggaaaccggagcagcgaaccggggaaa
ctcaagaccaacagtcaaccattcaaattggatccaaagtctgctcaccggaagctgagg
ttgtcccatgacaacctgactgtggagagggatgagacatcatctaagaagagccacagt
caggaccgcttctccagccacagcagctacggtgtcacagggaatgtctatattgacagt
ggtcgccattattgggaggctctgataggaggaagcacatggtttgcagttggcatcgcc
tacaagtcagcaccaaaacacgagtgggttggcaaaaactcagcctcctgggtactgtct
cgctgtaacaactcgtgggtagtgcgtcacaacagtaaggagatgcccatcgagccctca
cctcacctgcggcgtctcggaatattgttggactacgactctggatctctgtctttctac
gacgcagtgggctctcagcacttgcatacgttcgacgtcacctttgcacagccggtctgc
cctgtgttcaacgtgtggaacagatgtgtaacaatcctcactggacttcccatcccagat
cacttagaggggagagactacaacaactga
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