Scomber scombrus (Atlantic mackerel): 133993151
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Entry
133993151 CDS
T10651
Symbol
pdgfba
Name
(RefSeq) platelet-derived growth factor beta polypeptide a
KO
K17386
platelet-derived growth factor subunit B
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04020
Calcium signaling pathway
ssco04510
Focal adhesion
ssco04518
Integrin signaling
ssco04540
Gap junction
ssco04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133993151 (pdgfba)
04020 Calcium signaling pathway
133993151 (pdgfba)
09133 Signaling molecules and interaction
04518 Integrin signaling
133993151 (pdgfba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133993151 (pdgfba)
04540 Gap junction
133993151 (pdgfba)
09142 Cell motility
04810 Regulation of actin cytoskeleton
133993151 (pdgfba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ssco04052
]
133993151 (pdgfba)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133993151 (pdgfba)
Cytokines and neuropeptides [BR:
ssco04052
]
Cytokines
Growth factors (RTK binding)
133993151 (pdgfba)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Growth factors/receptors
133993151 (pdgfba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
133993151
NCBI-ProteinID:
XP_062288005
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All DBs
Position
2:complement(29710091..29727196)
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AA seq
571 aa
AA seq
DB search
MRSWVLLLLLAALSAARLRLGSAEGDPLPTSLVDLVRNSPISSVDDLKLLLQQETNAIEE
EEDEHDILTNHTHGRYTRSLVDAPQAQQAACKVRTEVMEVTRSMLDRRNANFLLWPLCVE
VQRCSGCCNSRLLQCVPTVTSSRYLQVFKIQYINRKVHYDKAIISVEDHVSCRCQASSSS
SSSSSSSSSSSSSSVPISHTTAQSNPNPPPPPPPPPQQPPPSSHLPRTAHPAPTKTHTSK
ADLHRHDDLKHNQQHYRTEEREPVARQWQQGSYTQLVHWTQPRVHQAPTHVQAGVHQPIT
GVLRPVSSWPSEARGEHSIKAGAQPVGQGSGYEGSREEGSVGVANSGSGVHHPDHAQRQQ
QLLQHQQKYHHQQPNHQTPFQPYNRGGSEDYHLNTPQSDSASALVKPTQSPKLEQNPTSP
EPTKQKDSVTSQKNIEVTNQKQTKTETASHKQGNEREESGSANSGDSAGAELANQGQKKD
SKVTSGDGHLTEEERRLKLLEMVQREPDPQTHLHPHHPQQRPKPTTFKTVVSTAAPVSLS
ARQAPFRPASPRRRRKHRKRISKAAMRAMIM
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagatcctgggtcctgctgctgctactggctgcgctttcagcggcccgtctgcggctt
ggcagcgctgagggcgatccgctccctacgtcgctggtcgacctggtgaggaactctccc
atctcctctgtggatgacctcaagctgttgctgcagcaggagactaatgcaatagaagag
gaagaagacgagcatgatattctcacaaaccacacccacggccgatacactagaagtctt
gtggatgcaccgcaagctcagcaggcggcgtgtaaagttaggaccgaggtgatggaggtg
acgaggtccatgctggaccgccgtaacgccaacttcctgctgtggccgctctgcgtggag
gtgcaacgatgttcgggctgctgcaacagcaggctgctgcagtgcgtccccactgtcacc
tccagcagatacctacaggtgtttaagatccagtacataaacaggaaagtccactacgac
aaagccatcatctcggtggaagaccacgtcagctgcaggtgtcaagcttcttcatcgtcc
tcctcgtcttcttcatcttcttcgtcctcttcctcctccagtgttcccatctctcacacc
acagctcagagcaaccccaacccccctcctcctcctccacctccaccacagcagcctccc
ccgtcctcccacctcccacggaccgcccatcctgctccaaccaagactcacacctccaag
gctgacctccatcgccacgacgacctgaagcacaaccagcagcactaccgcactgaggag
cgtgagccggtggcgaggcagtggcagcaggggagctacacccagctggtgcactggacg
caacctagggtgcaccaggcaccaacgcacgtgcaggcgggggtgcaccagccaattact
ggggtgctcaggccggtcagcagctggccatctgaagcgaggggggagcacagtattaag
gcaggtgctcagccggttgggcaagggagcggatatgaagggagcagggaggagggcagc
gtgggcgtagcaaacagcggcagtggcgtgcatcatcccgatcatgcacagaggcagcag
cagttgttacagcatcagcagaaatatcatcaccaacagcccaatcatcagacgccgttt
cagccatataaccgcggaggatcagaggattatcacctcaatactccccaatcagacagc
gcctctgcacttgttaaaccaacccagtcgcccaaattagaacaaaaccccacctctcct
gaacccaccaaacagaaagactcagtgaccagccaaaaaaatatagaggtcacaaatcaa
aaacagacgaagactgaaacagctagtcataaacaagggaacgagagggaggaaagcggg
tcagccaatagcggggactcggccggggcggagctggccaatcagggacagaaaaaagac
tctaaagtgaccagtggggacggtcatttaacagaagaggagaggaggctgaaacttctg
gagatggtacagagggaaccagacccacagactcatcttcatccacatcatcctcagcaa
agaccaaagccaaccacatttaaaacagtcgtctctactgcggctcctgtgtcactgtca
gcccgtcaggctccgttccgaccggcctcgcctcgccgcaggaggaaacaccgcaaacgc
atcagcaaagcagccatgagagccatgatcatgtag
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