Scomber scombrus (Atlantic mackerel): 133993180
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Entry
133993180 CDS
T10651
Symbol
itga6a
Name
(RefSeq) integrin alpha-6
KO
K06485
integrin alpha 6
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382
Cornified envelope formation
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04518
Integrin signaling
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133993180 (itga6a)
04514 Cell adhesion molecule (CAM) interaction
133993180 (itga6a)
04518 Integrin signaling
133993180 (itga6a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133993180 (itga6a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133993180 (itga6a)
04810 Regulation of actin cytoskeleton
133993180 (itga6a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133993180 (itga6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133993180 (itga6a)
04515 Cell adhesion molecules [BR:
ssco04515
]
133993180 (itga6a)
04090 CD molecules [BR:
ssco04090
]
133993180 (itga6a)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133993180 (itga6a)
Exosomal proteins of breast milk
133993180 (itga6a)
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin alpha subunits
133993180 (itga6a)
CD molecules [BR:
ssco04090
]
Proteins
133993180 (itga6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
Motif
Other DBs
NCBI-GeneID:
133993180
NCBI-ProteinID:
XP_062288035
LinkDB
All DBs
Position
13:15931341..15950911
Genome browser
AA seq
1068 aa
AA seq
DB search
MLLQGAHSAVYVALVYFLDPTLVLAFNLDTSHVIRRDGEPDSLFGFSLATHRQLNPDKRI
LLIGAPRARALGNQAANITGGLYKCEITKSKDCERIEFDIEEDISVENKENQWMGVTVQS
QGPGGKIVTCAHRYQRRLFVNTAQESHDITGRCYVLSQDLTIDSASDEDGGNWKFCEGRA
RSHERFGSCQQGVAATFTKDYHYVVFGAPGAYNWKGVVRVEQKNTTLLEMGVYDDGPYEV
GDENILNPELVPVPANSYLGFSLDSGHSITRSHGLTVVAGAPRANHSGAVILLKKAGEAS
SKLSVEHILQGPGLASSFGYDVAVVDLNGDGWQDIVVGAPQFYMKDGDVGGAVYVYINKA
GRWEKITPVRLNGTKDSMFGLAVESIGDINQDSYEDIAIGAPYADDGAGKVYIYHGSAKG
INTSPAQILSGKEHNIKMFGYSLAGNMDLDLNSYPDLAVGSLSDTALIYRARPVIRIRRN
VKISPQEIDLTIKTCGKSICLTVDACFAYRANHASYNPKITISYSIEADGDRRKQGLPSR
VMFLNKSRMETDYQFNGTVDLRGQNQDVCINIKAQLKENIRDKMRSIPIEVSAEIRDPKR
QKAKNGLPPLTPILDSSQPNKEVIEVNFVKEGCGKDHVCRSNLKMDYKLLYKPNNHGKYL
ELRKENKIPVFHLNYERKNLALQVTVSNRNGDDAYEAKLVGSFPDSLSYSGVRSQQTMKE
KQIICVANQNGSQADCELGNPFKRDSETTFFIHLSTVGMTLDTTEIEIDLHLQTTSVQEN
NAHVKVKAKVIIELPLSVIGEASPHSVLFGGDVKGESAMKTEEEIGSLINYTFKINNPWK
TLTSSVEASLHIHWPKSNKNGKWLLYLVKATVTGGTEEIPCSPGLEINPLKLIKESSASR
TKREIGEIKTGAKKLSGKKNILSCENGLKCVVLKCPLQGLDDTTVKLRSRLWTSTFLEDY
ASLSSLDIIVKASLVLHTPAKNMILGTPDPNVVLMVSPEKAVAQHVGVPWWIILVAVLAG
ILILVLLVYLLWKCGFFKRATKDQYDAAYHKAEIHVQPSDKDKLSAEA
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcagggagcacactcggctgtctatgttgcacttgtatattttctggacccc
actctggtgctcgccttcaacctggacaccagtcatgtcatcaggagggacggagagccg
gacagcctgttcggattttctcttgccacgcaccggcagctgaacccggataaaagaata
ctgctgattggtgcccccagagcccgagctttgggaaatcaggccgccaacatcacagga
ggcctttataaatgtgaaatcaccaagtccaaagattgtgagcgcattgaatttgatatt
gaagaggacataagcgttgagaacaaagagaatcagtggatgggggtgactgtccagagt
cagggtcccgggggaaagattgtgacatgtgctcaccgctatcagaggcgtttgtttgtg
aacacggcccaggagtcccatgacatcacagggcgctgctatgtcctgagtcaggacttg
accattgactcggcctcagatgaagatggcgggaactggaaattctgcgagggcagagcc
aggagccacgagaggtttggatcctgccagcagggtgtggctgccaccttcacaaaggac
taccattatgtggtgtttggagcaccaggagcttacaactggaaaggtgttgtgcgagtg
gaacaaaagaacaccactttgctggagatgggagtgtatgatgacggcccttatgaagtt
ggagatgaaaatatcttgaaccctgagcttgtgcccgtacctgccaacagctacctcgga
ttctccctcgattcgggacacagcatcacaaggagccatggcctaacggtggtggctgga
gctcccagagccaatcacagtggagctgtgatcctgttgaagaaggcgggcgaagcctcc
tccaaactctccgtggagcacattcttcaggggccgggactggcatcgtctttcggatat
gacgtggctgtagttgacctgaatggggatggatggcaagacatagttgtaggagcccct
cagttctacatgaaggacggagatgttggaggggcggtttatgtttatatcaacaaggcg
gggaggtgggaaaagatcactcctgtccgtctcaatggaaccaaagactcgatgtttgga
ctggcagtggagagcattggagacatcaatcaagactcatatgaagacatcgctattgga
gctccctacgctgatgacggggcaggaaaagtctacatttatcacgggtctgcaaaagga
atcaacaccagccctgcacagatcctttcaggaaaagagcacaacatcaaaatgtttggg
tattctctggccggaaacatggacctggacctcaactcttatccggatctggctgtaggg
tccttgtcagacacagctctgatctacagggcacggccggtcattcgcatccggagaaat
gtcaaaatatctccacaggaaattgacctcacaatcaaaacctgtggtaaaagcatttgc
ttaaccgttgacgcatgcttcgcctacagagcaaaccatgcatcttacaacccaaaaata
actatcagttattcaattgaggcggacggagatcgcaggaaacaaggactgccctccaga
gtgatgttcttgaacaaatctcgcatggaaacagactaccagtttaatggcactgtggac
ctccgtggccaaaaccaggacgtgtgcatcaacataaaagcccaactgaaggaaaatatt
agggacaagatgcgaagtattcctatcgaggtgtctgcagaaatcagggatcctaaacgt
cagaaagcaaagaacggcctccccccgcttacgcccatcttggactcctctcaaccaaac
aaagaggtcattgaggtcaactttgtaaaagagggatgtggaaaagatcatgtttgtcgg
agtaacctgaagatggattacaaattattatacaaaccaaacaaccatggcaaatactta
gaattacgcaaagagaacaaaatccctgtgtttcatctgaattacgagagaaagaacttg
gctctgcaggtgacagtgagcaacaggaatggagatgacgcctatgaagcaaagctggtg
ggctcgttcccagactcgctgtcatattctggagtccgctcacagcaaaccatgaaggaa
aagcagatcatctgtgttgccaatcagaacggctctcaggcagactgtgagttggggaac
ccttttaagagagactcagagactacatttttcatccacctgagcacagtgggcatgact
ctggacaccacagagattgaaattgacctgcacctccaaacaaccagtgtacaagaaaac
aatgcccatgtgaaagtaaaagccaaagtgatcattgaattgccgttgtcggtcatcggg
gaagccagccctcattcagtgttgtttggaggtgatgtgaaaggagaaagcgccatgaag
acagaagaggagattggaagtttgatcaactatacattcaaaataaacaacccgtggaag
actttgacgtcatctgtcgaagcgtcactacacattcactggcccaagtcgaacaaaaat
gggaaatggcttctgtatctggtgaaggccactgttacaggaggaacagaggaaatccct
tgctctcctggtttggagatcaaccccctcaaactcataaaggagtcctctgcatccagg
acaaaacgggaaattggggaaataaaaactggtgcaaaaaaattgtcaggcaaaaagaac
attttgtcgtgtgagaacgggctcaaatgtgtggtgctcaagtgccccctgcagggactt
gatgatacaacagtgaaactgagatctcgtctgtggacctcaacctttcttgaggattat
gcctctctttcgtccctggatataattgtgaaggcttcgctcgtgcttcatactccggct
aaaaacatgatcctgggaactcctgaccctaatgtggtactgatggtgtccccagaaaaa
gcagttgcacagcatgtaggagttccctggtggatcatactggtggctgttctcgcaggc
atcttgattttggtgttgttggtgtatctgctctggaagtgtggtttcttcaagagagca
acaaaagaccaatacgatgctgcatatcacaaggcagagatccatgttcagccctctgac
aaagacaaactctctgctgaggcctga
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integrated database retrieval system
