Scomber scombrus (Atlantic mackerel): 133993183
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Entry
133993183 CDS
T10651
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133993183 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133993183 (si:ch211-199f5.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF5783
Syndecan
Motif
Other DBs
NCBI-GeneID:
133993183
NCBI-ProteinID:
XP_062288042
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All DBs
Position
13:complement(13088509..13091889)
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AA seq
992 aa
AA seq
DB search
MRMLTKGKITTKMIRGKFITYWRRWIFIFSIHHFLFASLAQSEGNTIRYQTNEEDAPGTV
IGNLAKDMSLSLSHSSKTNFRMMKQFNDSFIRVRESDGELTVAERIDRERICRHTPQCLI
TFDVVNFSKDRYKLIHVEVEIKDINDNSPEFPNKESIVEISENAALGSLLPLDPAVDADV
GSNYIQSYQISVNSHFTIDVLLRADGVKYAELVLMKGLDRETQSSYTVELVATDGGNPYR
SGSTKITIRVTDFNDNSPVFDQNSFSVSLPEDASVGTVILDLNAVDADDGLNGEVVYGFG
KQVSHEIRELFHVDNKSGRLTLKSPVDFEDKSTYELDVQATDLGPNPTPSVCKIIIHVTD
VNDNAPEISITPMTSISTGIAYISEEADKDSLVALISTLDRDSGVNSQVHCTLYGHDHFK
LRQAYEDSYMIVTAAALDRERISEYNLTVMAEDFGSPPLRKITQYTIRLSDENDNAPHFT
KAVYEVSVMENNPPGAYVTTVEASDTDLGNNGKITYKLVDSVIMGSPMNTFVSLNSVSGS
IYALRSFNYEVMKHLDVHIQASDGGSPQLQSTAVIRLKIVDQNDNQPSIIEPPLFKGSAE
VFLPKDAPAGYVVTQIKATDADEGINAQLSYKITEGGHLGFSINKDTGKVHVSRQLTYDL
ADNVKVIVSVSDNGSPALTSTAIIHFSFIEGTVSSMPSLTENGSEDLFEWDMSIAIIIVL
AGSCSLLLLAIILITTICSRQKKEKREGGYDEKEDIPNVENVESGHIDSLIANHKGKVFD
AHPFPEKSPVASSNTTEAGCDDGRQTAGIFESNSRVMEGKLKGYSTLPGYGKETVRPITI
WKGNSFTTISARDPHISGKDSGKGDSDFNDSDSDISGDVHKKDSPPTNSLWACTSECKVL
GHSDRCWSPSATRPNTSLACGPHLSTFSKTASLPRDTRRENYYPAHLPKTNGLQSVYEKV
QHQEFDYILVGPPTPARIQEADEISIPEYTNS
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgcttactaagggaaagattactaccaagatgatacgaggcaaatttataact
tattggcgtcgttggatttttatattctcaatccatcattttttatttgcctcactggct
cagtccgagggaaatactataagataccagaccaatgaggaggacgcaccgggaacagtc
atcggaaaccttgccaaggacatgtccttgagtctgtctcattcctccaagaccaatttc
aggatgatgaaacaattcaatgattcattcatcagggtaagagaaagcgacggggaactc
actgtcgcggaacggattgacagggaaagaatctgcagacacactccacagtgtctcatt
acttttgacgtggtaaatttctccaaagatcgttacaaattgattcacgttgaggtggaa
ataaaggacatcaatgacaactccccggagtttccaaacaaggaatctatagtggagatc
tcagagaatgcagcactggggtcccttcttcctttagaccccgctgtggacgctgatgtc
gggtcaaactacattcaaagctatcaaatttctgtaaacagtcatttcaccattgatgtg
ctcctgcgagcggatggggttaaatatgcggaattggtactaatgaaagggctagacagg
gagactcagtcatcatacactgtggagctggtcgccacagacggaggcaacccatacaga
tcggggtcaacaaagataactatcagagtgactgactttaatgataatagtcctgttttt
gaccagaatagtttctcagtcagtttgccagaggacgcatcggttggcactgttatactg
gacttgaacgcagttgatgctgatgatggtttaaacggagaggtcgtctacgggttcgga
aaacaggtttctcatgagatccgagaacttttccacgtggataataaatcaggtcgcctg
actctcaagagcccggtggattttgaggacaaaagcacttatgagctagacgtccaggcg
actgatttgggtcctaacccgaccccctccgtgtgcaaaatcataattcacgttacagac
gttaacgacaatgccccagaaatcagtatcaccccgatgacctccatctcgactggcatt
gcatacatcagcgaggaggcagacaaggacagtctggtggcgctgatcagcaccttggac
agagactcgggtgttaacagccaggttcactgtacgttatacggccacgaccatttcaag
ctccgacaggcttacgaggacagctacatgatagttacagctgcagccttagacagggag
aggattagtgagtataacttgacagtcatggctgaggattttggctcaccccctctgaga
aagatcacccagtacaccattagactcagcgacgagaatgacaacgcccctcactttact
aaggctgtgtatgaagtttcagtgatggaaaacaaccccccgggcgcgtatgtcaccaca
gtcgaggccagtgacacggatctgggcaacaatggcaaaattacttataagcttgtggac
agtgtcatcatggggtccccaatgaacacatttgtgtcacttaattcagtgtctggctcc
atatatgccctaagaagttttaactatgaagtcatgaaacatctagatgtacacatccaa
gcaagcgatggggggtcaccacagctgcagagcacagctgtcatcagactaaaaatagtt
gatcagaatgacaatcaaccttctatcattgagccaccccttttcaagggatctgctgag
gttttcttgcccaaagatgcacctgcaggttacgtggtaacccagataaaggccacagat
gctgatgagggcataaatgcacagctgtcctataaaatcacagagggaggacacctgggt
ttctctatcaacaaagacacagggaaggtgcacgtgagccgacagctgacttatgatctc
gcagacaatgtcaaagtcatagtatcagtcagtgacaatgggtcccctgcacttacttct
acagccattatacacttcagtttcatagaaggaactgtatccagtatgccttctttgact
gaaaatggcagtgaggatctctttgaatgggatatgtccatagccataatcattgtcctg
gcagggagctgctctctcctcctgttggctatcattctcatcacaaccatttgtagccgc
cagaaaaaagagaagagggaggggggctatgatgaaaaggaagacataccaaatgtggaa
aacgtggaaagtggtcatattgattcattgattgccaaccacaaaggcaaagtgtttgat
gcccacccattcccagagaaatctccagtggccagcagcaacacaacagaggcaggctgt
gatgatggcaggcagacagcaggcatctttgagtcaaacagcagggtgatggaagggaaa
ttaaagggctattctactttaccgggatatgggaaagaaactgtccgaccgattacaata
tggaagggcaactccttcacaacaatctcagcaagagatcctcacatcagtggcaaggac
agtgggaaaggtgacagtgacttcaatgacagcgattctgacataagtggagatgtgcat
aaaaaagactcaccgccaacaaacagtctctgggcatgtacaagtgagtgcaaagtgttg
ggacactcagaccgatgctggagtccctcagctacaaggcccaacacgagcctggcctgt
ggaccgcatctgtcgacgttctccaagacagcttcacttccccgtgacaccagaagggaa
aactactatccagctcatctacctaaaaccaatggtctgcaaagtgtgtacgaaaaagtt
caacaccaggagtttgattatattcttgtgggtccgccgacaccggccagaatacaggaa
gcagatgagatatccattccagagtacacaaactcataa
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