KEGG   Scomber scombrus (Atlantic mackerel): 133993209
Entry
133993209         CDS       T10651                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382  Cornified envelope formation
ssco04510  Focal adhesion
ssco04512  ECM-receptor interaction
ssco04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133993209 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133993209 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133993209 (col4a1)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    133993209 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    133993209 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:ssco00536]
    133993209 (col4a1)
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   133993209 (col4a1)
Glycosaminoglycan binding proteins [BR:ssco00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133993209 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 133993209
NCBI-ProteinID: XP_062288076
LinkDB
Position
13:11623073..11663931
AA seq 1641 aa
MLLPTGTLFLLAALSLSVDLTRAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GPEGPPGAIGTKGDLGESGAPGIKGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCN
GTKGERGRDGTSGFPGLQGPPGIPGIPGMKGDPGGVIGIVPLKGERGFPGTPGLPGSIGY
PGPTGPPGSRGYQGPKGDPGLPGPPGEKGDKLAFVGGKGDKGDQGYRGPPGPPGPPSQPV
GGTPVTEYIPGPKGDTGYPGEKGDKGFCIPHHNGVKGDQGPPGQIGKAGKEGETGSKGEK
GFPGNPGYIGTQGEKGERGPPGFGNGAPGPPGPRGFPGLQGEKGFPGPQGEAGPPGQFVE
GPRGERGQRGDIGEKGDRGVEGESLAGPPGQPGLNGAPGPPGLPVDPNECNIEKGAPGPP
GLPGLQGELGQKGDQGDTCVQCEGFGPTGLPGPEGPKGERGPPGAVGGKGEKGQSGPAGN
PGGPGIEGSQGLIGAPGAVGEPGDIFIAPGLKGDKGLPGVPGSSGKRGLDGQPGRDGIPG
KPGLKGEPAKEGIKGERGPQGDPGLIGTHGERGPPGLPGFGQPGNAGEKGNPGRPGIPGT
PGVPGAKGDPGQALSTPGPQGVPGPRGEPGRPGHQGDRGIPGDPGVSGYTGQKGDTGPPG
IGLPGPTGPKGVGGIPGTQGFPGETGTPGQDGLTGKPGSPGQKGEPGRGLPGPKGEQGRQ
GITGFQGEKGKIGLPGVPGQEGLTGNPGPQGIKGEIGPPGLPGVVGSPGAPGKGSPGAPG
PQGQPGEPGPYGGEGVKGEKGYPGPPGLDMPGPQGEKGGPGFPGTPGSKGLSGPPGLPGR
DGLIGYQGSKGEMGVMGTPGVPGFPGPPGTPGSPGLRGDAGLPGSRGFIGESGSKGERGD
TGLQGPPGNMTEVDMEHMKGEKGDLGDHGDPGVTGEKGYRGQPGDPGMPGKDGESGSPGQ
PGEKGDPGFPGRPGSIGQPGQKGSVGEMGIPGPVGPKGTKGDFGTPGHPGFRGTDGQKGD
TGIPGEAGIGLPGHPGEKGQIGQPGFPGTLGDKGQKGHMGMPGKPGGQGTKGEQGSIGYP
GQSGIPGEKGTPGLPGSPGEPGLDGQAGESGLQGPPGPTGEKGEAGVDGIPGSSGERGDP
GLPGRGSPGSPGVLGDKGDKGIPGFPGTPGQPGIPGIKGDKGHEGLPGLQGEPGDRGFPG
ASLEGPKGERGETGQPGEAGSTGATGASGLPGRDGLKGDKGDQGLAGFQGESGHKGDPGT
PGLPGQAGLPGIDGQKGERGLQGVPGFPGTKGYLGDKGFKGELGDRGFPGEKGVDGPPGP
PGPHTFIKGDIGFPGVQGLPGPQGPSGFPGQKGLQGLTGLQGPKGEDGFPGHHGQSGGKG
EQGLPGPQGPRGHTGPPGPDGVPGQVGQPGPSSMEHGFLVTRHSQSVDIPPCPDGTSRIY
DGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMSMAPITGESIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPHGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPT
TLKAGNLRTHISRCQVCMKRT
NT seq 4926 nt   +upstreamnt  +downstreamnt
atgctgctaccgacaggtaccctgtttctgctggcggctctctcactaagtgttgacctg
actagagctgagggttgtggaacatcatgtggaaaatgcgactgcagtggcgtgaaagga
gcaaagggtgagcgtggatttccgggtcttcaaggcaatatgggattcccagggatgcag
ggacctgaggggcctccaggggcaattggaactaagggagatctgggtgaatctggggct
cctggaataaaaggagtgcggggtcctcctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaacggaaatgatggtccacctggtgcgccaggtatcccaggatgcaat
gggactaaaggagaaagaggcagggatggcacttctggttttcctggtcttcaaggacca
cctggcatcccaggaattcctggaatgaagggtgatcctggtggtgtgattgggattgtt
cccttgaaaggagaaagagggttcccggggacacctggacttcctggatcaattggatat
cctggacctaccggccccccaggatctcgtggctatcaaggacccaaaggtgatcctggt
ttaccaggccctcctggagagaagggtgacaaactggcctttgtgggtgggaaaggagat
aagggtgaccaaggatatcgtggcccacctggccctcctggacctccatctcagccagtg
ggtggaacacctgtcacagagtatatacctggaccaaagggagacacaggatatccagga
gagaaaggagacaaaggcttttgcatccctcatcacaatggtgtcaaaggtgatcaaggc
ccacctggacaaataggcaaagctggaaaggagggagagactggatccaagggagaaaaa
ggctttcctggcaatcctggatacattggtactcagggtgaaaaaggagaaagaggacca
ccaggttttggtaatggtgcccctggtccccctggccccagaggtttcccaggattacag
ggagaaaaaggttttcctggtccacagggagaggcaggtcctccaggccaattcgttgaa
gggcctcgtggagagaggggtcagaggggagacataggtgagaagggagacaggggtgta
gaaggagagtctttagctggacctccaggacaacccggactcaatggagcccctggacca
ccaggactgccagttgaccccaatgaatgtaacattgagaaaggagctcctggaccacct
ggactacctgggttacaaggggaactgggacagaaaggtgaccaaggagatacctgtgtt
cagtgtgaaggtttcggccccactggattacctggccccgagggccctaaaggagagcgg
ggacctcctggagcagtcggtggcaaaggagaaaagggtcagtctggaccagctggaaat
cctggaggacctggtattgaaggcagtcaagggctaataggagctcctggtgctgttggt
gagccaggggacattttcatagctcctggtttgaagggagacaaaggtctgcctggtgtt
cctggttcatctgggaagcgggggctggatggacaaccagggagagatggcatccctggt
aaacctggccttaaaggagaacctgccaaagaaggcatcaagggtgagcgtggaccacag
ggggaccctggtcttattggaacccatggagagaggggtccccctggtttgccaggcttc
ggacaaccaggaaatgccggagagaagggcaacccggggagaccaggcattcctggaaca
cctggagtacctggtgcaaaaggtgacccaggtcaagctctgagcacacccggacctcag
ggtgtacctggaccacgaggagaacctggcagacctggacatcaaggtgacagaggcatt
ccaggagaccccggggtgtcaggttacactggacaaaaaggtgacaccgggccccctgga
attggattgccaggcccaactggtcccaaaggagtcggtgggattccaggaactcaggga
tttccaggagagacaggaacaccaggacaggacggccttactggaaaacctggttcacct
ggacagaaaggtgagccaggacgaggactgccaggcccaaaaggtgaacagggacgccaa
ggaattactggcttccagggagagaagggtaaaattggactacctggtgttcctggacag
gaaggcctgacaggaaacccaggacctcagggaatcaaaggtgaaataggacccccagga
cttccaggagtggttggatcaccaggtgctccaggaaaaggttcacctggcgctcctgga
ccacaaggacaacctggagagccgggaccatacggtggggaaggtgtaaagggagaaaag
ggctacccgggtcctcctggtctggacatgccagggcctcagggagagaagggaggccct
gggttcccaggaactccaggttctaaaggactgtcagggccaccaggcttacctggcagg
gacggactgattggataccaaggttctaaaggtgagatgggtgtcatggggacacctgga
gtaccaggatttcccggaccccctggtacacctggatctcctggtcttagaggtgacgct
ggtcttcctggatcaagagggtttattggagagtctggatctaaaggagaaaggggtgac
acaggtcttcagggacctcctgggaacatgactgaagttgacatggagcacatgaagggg
gaaaagggagacctcggagaccatggcgatcctggggtcactggagaaaagggctaccga
ggacaacctggagatcctggaatgcccggcaaagatggagagtctgggtcacctggacaa
ccaggtgagaaaggagacccgggttttcctggaaggcctggcagtataggacaacctgga
cagaagggaagtgtaggagagatgggaataccaggtccggttggtccaaagggtactaaa
ggtgattttggtacaccaggacatcctggcttcagaggcacggatggacagaaaggagac
acgggaatacctggtgaggcaggtatcggtctcccgggacatccaggagaaaagggtcag
ataggccaaccgggattcccaggaacactaggagacaagggtcagaaaggtcatatgggt
atgcctggcaagccaggagggcaaggaactaagggagaacaaggaagcattggctatcca
ggtcagtcaggtataccaggtgagaagggtaccccagggctgcctgggtctccaggagaa
cctggtctagatggtcaggctggtgaaagtggcttgcagggacctcctggtcctactgga
gagaagggagaggctggagtggatggcatccctggatcctctggagagagaggagaccca
ggtttacctggccgaggttcccctgggtcacctggagtgctcggtgacaaaggtgacaaa
ggtatccccggtttccctggtactccaggtcagccaggtatccctggtatcaaaggcgac
aagggacatgaaggacttccgggcctccagggtgagccaggagacagggggttccccggt
gcctctctagagggccctaaaggagaacggggagaaacaggacaacctggagaagcagga
tccacaggagcgactggagcctccggtctgccaggcagagacggcttaaagggagacaaa
ggagatcagggtctcgctggtttccagggagagtcaggacataagggtgaccctggaact
cctggacttcctggacaagctggccttccaggtattgatggacaaaagggagagagggga
ctgcagggtgttcctggcttcccaggtacaaagggttatcttggagacaaaggattcaaa
ggagaacttggagacagaggattcccaggagaaaagggtgttgacggcccccctggtccc
cctggcccccacaccttcatcaaaggagacattgggttcccaggcgttcaaggcttacca
ggaccccagggcccatctggattccctggacagaagggactgcaaggtttgacaggtctt
caagggccaaaaggtgaagatggattccctggacatcatggtcagtctggaggtaaagga
gagcagggcctgcctgggccacaaggccccagaggacacactggcccccctggacctgat
ggtgttccaggtcaagtgggacagcctggcccctcctccatggaacacggtttcctggtc
acccgtcacagccaatcagtggatattccaccttgtcctgacgggacctcacgcatatat
gatggctactccctgctctatgttcaaggcaacgaacgctctcatggacaggatcttggt
acggcagggagctgtctgaggaagttcagccccatgcccttcttgttctgtaacatcaac
aacgtgtgcaactttgcctcccgtaatgattactcctactggctcacctcccctgagcct
atgcccatgagcatggcaccaatcactggtgaaagcatcaaacccttcatcagcagatgt
gctgtgtgtgaggccccagccatggtgattgcagttcacagtcagaccatcatgatccca
ccatgtcctcacggctgggactctctgtggattggctactcctttgtcatgcacaccagt
gccggtgctgagggctcggggcaggctctggcctctcctggttcctgcctggaggagttc
cgcagtgctccattcatcgagtgtcacggtcgtggaacctgcaactactacgccaactct
tacagcttctggctcgcaacaattgaagacagcgagatgtttacgaaacctgtccccaca
acactaaaagcaggaaatctccgaacacacataagccgctgtcaggtgtgcatgaagagg
acttaa

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