Scomber scombrus (Atlantic mackerel): 133993250
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Entry
133993250 CDS
T10651
Symbol
pcdh8
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133993250 (pcdh8)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133993250 (pcdh8)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
133993250
NCBI-ProteinID:
XP_062288128
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All DBs
Position
13:13115708..13119164
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AA seq
971 aa
AA seq
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MGFCKMSSVGLCTVLVLCLYTVQCTTTRYFTYEEDAPGTEIGNLSQDLKIDPADDPDTSF
RFMQENNSSVIQMRETDGLLSVAEVIDREQLCPRSPRCFITFDTVAFSKEKFQLIHVEIE
VKDINDHAPVFARNETNLEIVENVPLDSRFLLQIALDQDVGENYIQSYNISPSSHFAIEV
RDREDGVKFAELVLVRQLDREVEDSYSIEVTAADGGVPAKSGSVTVNIKVLDFNDNRPTF
EHSSLKVELNEDSPVGHRVVKVHAFDPDDGINGEVMYAFNGLSPEATRIFHIDPYSGDVT
LKALVDFEKRRSYELNIKASDLGANSVPSSCKVVIDIVDVNDNAPEISIKPMTSSSDGVA
YITEAAAAESFVALISTSDRDSGSNGYVRISLLGHEHFSLQQAYGDTFMIITTTTLDREK
IPEYNLTVVAEDLGSPPFKTVTQYTICVTDENDNNPLFSKTLYEVSVMENNIPGSYVTTV
VARDPDVGKNAKVSYKLIDSLVQGGSPVSTYVSIDSQSGSLYTLRSFDYETLKQIDLVIQ
AEDRGSPSLSSKSTIRIRVVDQNDNYPHFTFPILLNDSADISLPFNAPPGYLALRVSAED
EDEAVNGELSYQFVQGDPKLFTMNTDTGEIALKQWLTAEIGDVLEMKIAVSDNGRSPLSA
SATIRFVITDTEPSEDQVVIVLRSSDEEGSGLDGSLIVIIMLSGGCALLLIAIVAVVVTC
KLSCGGRNRGSKREVRHSLFDSRPMPMLGSTEPNIYTGQRGFFHERTSSSLDDSCLYEDR
SGESETKMFLPSKHFQPSSVWQGDKYCLQVSGIGNTDQLSVKDSGKGDSDFNDSDSDISG
DGGKKNFSTFQPRLKSSSSATNSLSGDCQGTYCAIPAQSFRAPRDNAYTIGFSPVPVFNN
PHGYPVSWKDSSYGTNRPKSKSSAQTFSRTHTLPSYFPQQQRDASVPGTEIHKQSPNIVT
VATALEVATIF
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgggattttgcaagatgtcaagtgttggactctgcactgtacttgttttatgtttatac
actgttcagtgtacaactactaggtatttcacctatgaggaggacgcaccaggcaccgag
attggaaatttatcacaagacttaaagattgatccagctgatgaccccgacacatcgttc
cgcttcatgcaagaaaacaactcttctgtgattcaaatgagggagacagatgggcttctg
agcgttgcagaagtaattgaccgagagcagctctgccccagatccccgcgttgcttcatc
accttcgacactgtggccttctccaaagaaaagtttcaactcatccacgtggagatcgag
gtgaaagacattaacgaccacgcgcctgtgttcgcgcgcaatgagacaaacctagagata
gtggaaaatgtgccgctggactcaagattccttctgcagatcgctctcgatcaggatgtg
ggtgaaaactacattcagagctacaacatttctccctccagtcatttcgccattgaagtg
cgcgatagggaggacggggtgaagtttgcggaactggtgctggtgaggcagctcgacagg
gaggtggaggactcctacagcatcgaagtcactgcagctgacggaggagtgcctgcaaag
tctgggtcagtgactgtgaatatcaaagtgcttgactttaacgataaccgcccgactttt
gagcacagctcactgaaagttgagctgaatgaagactctccagtgggtcaccgagttgtc
aaagtgcacgcttttgaccccgatgatggcattaacggtgaggtgatgtacgcattcaat
ggattgtcaccagaggctacacgcattttccacatcgacccgtactccggggacgtgact
ttgaaggcgctggttgattttgagaagagaaggtcatacgagctgaacatcaaagcctcc
gatttaggcgcgaactcggtcccatccagctgcaaagttgtgatagacatcgtggacgtt
aatgacaacgcacctgaaatcagcatcaaaccgatgacctccagcagtgacggagttgct
tacatcacagaagctgcagctgcggagagtttcgtggctctgatcagcacctcggacaga
gactccggctccaacgggtacgtgcgcatcagcctgctcgggcacgagcatttcagcctc
cagcaggcgtatggggacactttcatgattattaccactactaccttggacagagagaag
atcccagagtataatcttactgtagttgcagaagacttaggaagtccacctttcaaaact
gtcacacagtatacaatctgtgtaacagatgagaatgacaacaaccctctcttcagcaag
actctttatgaagtttcagtcatggaaaataatattccaggttcgtatgtgaccactgtt
gttgcccgtgatcctgatgtgggaaagaacgccaaagtctcttacaaactcatagattca
ctggtgcaaggaggatccccagtgtccacttatgtttctatagattcacagtctgggtct
ttgtacactttacggtcttttgactacgagactctcaagcagattgacttggtcatccaa
gcagaagacagaggttccccttctctttcgagcaaatcaacaatcaggattagagttgtg
gatcagaatgacaactatccacacttcaccttccccatccttctgaatgactctgctgat
atttctttgccctttaatgcacctcctggctatcttgccctccgcgtctcagctgaagat
gaggatgaggcggtgaatggtgagctctcctaccaatttgtacaaggtgacccaaagctt
ttcacaatgaacacagatactggagaaattgctttaaaacaatggctgacagctgaaatt
ggagacgtgctcgaaatgaaaatagcagtgagtgacaatggcaggtccccgctctctgca
agtgccactattaggtttgtcatcacagacactgagccctctgaagaccaagtcgtcatt
gtgttacggtcaagtgatgaagaaggctccggcttggatggctcactaattgtcattatt
atgctcagcgggggttgtgcattgttgctgattgcaatagtggctgttgttgtcacatgc
aaactcagctgtggagggagaaaccgtggctccaagagagaagtgcgtcacagcctattt
gacagcaggcccatgcccatgctcggctcaacagaacctaacatatacaccggtcaacga
ggcttcttccatgagagaacctcttcttctctggatgattcctgcctgtatgaagacaga
agtggggagtcagaaacaaagatgtttctgccctccaagcatttccaaccatcatctgtg
tggcaaggtgacaaatactgcttgcaagtgagtggcattggcaacactgaccagctgagc
gtgaaggacagtggcaaaggggacagtgacttcaacgacagcgactccgatatcagtgga
gatggaggcaagaagaacttcagtaccttccagccaaggctaaaaagttcatccagtgcc
actaacagcttatctggggattgccaaggcacctactgtgcaataccagcacaaagcttc
agagcccccagagacaacgcatacacaataggcttctccccagtaccggttttcaacaat
cctcatggctatcctgtctcttggaaggattctagttatggcacaaatcgcccaaaatca
aagagcagtgcacagactttctccaggacccatacccttccctcttacttccctcagcaa
cagcgtgacgctagtgttccaggcactgaaatccacaagcagagtccaaatattgtaaca
gtggctactgctttagaggttgcaactatcttttag
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