Scomber scombrus (Atlantic mackerel): 133993363
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Entry
133993363 CDS
T10651
Symbol
ranbp2
Name
(RefSeq) RANBP2-like and GRIP domain-containing protein 8 isoform X1
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03250
Viral life cycle - HIV-1
Brite
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133993363 (ranbp2)
Chaperones and folding catalysts [BR:
ssco03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
133993363 (ranbp2)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
133993363 (ranbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
IR1-M
Pro_isomerase
Zn_ribbon_RanBP
TPR_CcmH_CycH
TPR_16
TPR_1
ARM_TT21_C
TPR_2
DUF1681
Motif
Other DBs
NCBI-GeneID:
133993363
NCBI-ProteinID:
XP_062288262
LinkDB
All DBs
Position
13:19622485..19650125
Genome browser
AA seq
3037 aa
AA seq
DB search
MRRSKTEVDRYVSSVQSSSPSLKEKPVKGFLFAKLYFEAKEYELAKRHVSEYLKVQERDP
KAHKFLGQLFEREREINKAVGCYKRSVDLNPAQKDLVLKVAELLVNKEECDSKADFWVEK
AAKLLPGNPAVFNLKERLLNRQGQQGWNQLSDLLQAELAARPADTHVNVKLVQLFCQDGR
LDEAVKHCLSVERRGMLRHSLDWYTVVVHTLQEYLAQPSIASDEKMCRCLQRELLLAHCS
LLRITLSGSSVQPSIDALRDFDQAMQTLSSIAGRHTDYLCEVFVEMRGHLYLHVATLVLK
LAQDQQKTWRAVIDLAALCYLLAYQVPRPKSKVTKRDQSAPQLLELLANDRLSQAGHMLL
NLSTDPSTLIGEVVEAFGNRCGQDSLFELLFGQQASSASSFIANDDIHSIKAMTPQISQI
AGWDAGSILLHAGDLQHLSWLGLQWTLLGQRPELRDWLQQLFPRLTLETSKLDTNAPESI
CVLDLEVFIYGVVFCSHCQLQETAKISSAVNQQQQQQLYEPRCLPLPLLRLLTTDRQREW
WDAIYSLIHKQAAPGMSAKLRMIVQHGLKTLRAGEKHGLQPALAIHWAQCLSQTVDGLKS
YYDQKEYISRSVHYWKVVLPLLDRIKNRHSIPEPLEPLFIHFRSKDTQISSVKGYEEEAQ
ITYAVLLDIEGKTEEAIAALEIINNMSSAWHLAQIYQRLSEEASNGVEETQDKCITFLRK
FRTYLAKIYNANVDDFDKLPVSMEEVYDLLNDVNQQLGENGEDMDEGEEEDKVGRGPAHS
TPAHPLETSATISHVKFATPSPNKSIVSPSKRHLISPKTPPHWVEDQKSLLQMLCQQVEA
LKNEVHDLRHNSSGSVSSPHHKMYGESYGAEGLQEPFTPVQSYHGAPLTVATTGPSVYYN
QSPAYNSQYLLRTAANVTPTKGPMYGMNRMPPQQHMYAYQQPTHTPPLQTAPACIYPPQE
QVFGAPLRFESPATNLLSPYSEEYYGQSVPQQTTNPPLPEPGYFTKPSVVPVQPQKSIVG
KPMNFGKLSFSQQAPAEVPKVPSFGASAVAQSTPSAAFKFNSNFKSNDGDFTFPASQAKH
SESLLGLLTSDIPTKTDTVPEKPTGQEQPPSQTGIFTFGNTNSNGFSFADAAQSTNTGSV
FGNVDQPFKFGDTKPVFGLPTSAAEEERAADSDNDSTHADEDEDGPHFEPIVPLPDKVDV
KTGEEEEEEMFCSRAKLYRFDTDSKEWKERGIGNIKILKHSTKGKVRLLMRREQVLKICA
NHYINTDMLLKPNAGSDKSWVWNAIDYADEEPKPEQLAIRFKTVDEASLFKAKFEEAQKI
VLRSSEKQDQQEKKESLPASNPPSTLAAQFALKEGEWDCDVCCVRNKPQDMKCAACQIAN
PNCSSSSKPDIQAANETKASPFTFKFGTDSSKPTSSGSPFTGFGGFGASVPSAFTFGTGT
SKPADTVTSAFGSGFGVQFGKKPGQWDCGTCSVANEASADSCVSCKALKVSPKKTATEQV
APAATAPVVKPSDVVDIGFAAQFSKKPGQWDCDICEVRNEASTDKCVACNTPNPTAKSKE
DTPVASSLSTALVMPGFGAELAKKDGQWDCNSCLVRNDASATECVSCHTCRPLEEMFAKK
DGEWDCDMCLVRNDASANKCAACQTPNPNAKSVTSAAPSASNFKFTFGDKSSSSQPAGTG
FTMPFGTSSTFGTSSTFQFGQNKDTSSAASFKFEVPQSGSSTTSSSGFSFSMPIPSGGFK
FGIQEATKETSSTDNETAPTVSASSFLKSIADKHKEKEDVCTPLVDQTGKDPNPLIAGKT
DTFSFADLAQTTGEDFKFGQKDPDFQGFSGAGEQLFSAFPATPTKTDATHDLEEDGMYKT
EENDDIQFEPVVQMPDKVDLVTGEEDEVVLYSQRLKLFRFDSNTSQWKERGVGVLKFLKN
TSNGRLRVLMRREQVLKVCANHWINTTMNLKPLAGSDRAWIWMANDFSDGDAKPEQLAAK
FKTPELAEEFKEKFEECQRLLLDIPLQTPHKLVDTGRTAHLIQKAEEMKSGLKDLKFFLT
DEKTKIKDDESQEEPSSLVMKSHGETTGPTLEWDNYDLRDEALDTTTDSSVYASPLASSP
LRKNLFRFGESTAGFNFSFQPGISPSKSPAKLNQSRASVGTDDEQDVTQDEERDGQYFEP
VVPLPDLVDISTGEEEELIVFSHRAKLYRYDKGLSQWKERGIGDLKILQNYKTKRVRLIM
RRDQVLKICANHWITAAMKLEPMKGAEKAWVWSALDFAEAGESNIEQLAVRFKLLETANA
FKQVFEEAKVAQEKGELMTPVTSRVATPQDSEPTTSEKDATPVCGKAAITVLEETTKERT
ELSTDSQPCTAGSQSPGNPSKGVVSPPKFVFGTQSLQKIFGSPKSHSDDGECGLKPKDSG
HPAKAPPAQPAFKIPEKGQASARSDDEDDDEVEIVYVREPTAEQAALARKLLLPLTFFCY
QNEPGYTSDDQTDDEDYESAVKALNGKLYPDPPERKAGACGDESDCQVVWEKKPTPEEEE
KAKSLQLPPTFFCGLSTTDSDPDHDKSEDFETEVRKAQQDLEAEFNKPDMVSSSPAEETT
SDPSSSSAEAAVSMSTPEDQTSDQPADTQSEAPRSSSPIDLSTKKSQEPDSNTETSAATT
ATTTSQDSSGFGFNSLGGFSFADLATKTEGFAFGANDSNFSWANAGATVFAGPAAPKNDG
DVEGSDEEEGSNNPDIHFEPIVSLPEVETKSGEEDEEILFKERAKLYRWDRDLGQWKERG
IGDLKILFHPAKHFYRILMRREQVLRVCANHTISEAMELKPLNASANSLLWTATDYSDGD
GAVEQLAAKFKTPEIAESFKKIFCECQSRMGQSSDDPSSVFSPQMSKIQEHSRDSNPKVF
LTVTADAEPLGTITIELFSHIVPKTAENFKVLCTGEKGFGLRNSIFHRVIPDFMCQGGDI
TKSDGTGGKSIYGSQFEDENFDVRHTGPGILSMANRGRDTNNSQFFITLKKAEHLDFKHV
AFGWVREGMDVVQQMGALGTKGGPPSKKLVITDCGQL
NT seq
9114 nt
NT seq
+upstream
nt +downstream
nt
atgcggcggagtaagacagaagtggaccggtacgtttcctccgtacagagctcctctccc
tccctcaaagagaagccagtcaaaggatttttatttgcaaaactctactttgaagcaaaa
gagtatgaacttgcaaaaagacatgtatcagagtatctcaaagtccaggagagggatccc
aaagcacacaagttcctcggacagctcttcgagagagaaagagaaatcaacaaggcagta
ggatgttacaagcgatcggtggacttgaacccggcccagaaagacctggtgctgaaggtg
gcagagttactggtcaacaaggaggaatgtgacagcaaggcagacttctgggtggagaag
gctgccaagctgctgccgggaaaccctgcagtctttaacctgaaggagcgtctgttgaat
cgtcaaggtcagcagggttggaaccaactctctgacctcctccaggccgagctggcagcg
cggccagctgacacacatgtcaacgtgaagctggttcagctgttctgtcaggacggtcgg
ctggatgaggccgtcaagcattgcctgtctgttgagagaaggggcatgcttcgccacagc
ctggactggtacaccgtggtggtgcacacactacaggagtatctggctcagcccagcatc
gccagtgatgagaagatgtgtcgctgtctccagagagagctgctattggctcactgcagc
ctgctgagaatcacactgtctgggagcagtgtgcagcccagcattgatgccctcagagat
tttgaccaagctatgcagacgctgagtagcattgcgggccgccacacagactatctttgt
gaggtgtttgtggagatgcgaggtcacctctatttgcatgttgccacattagtcctgaag
ctggctcaggatcagcaaaagacgtggagggccgtcattgacctggctgctctgtgctat
ctgctggcataccaggtccccagaccaaagagtaaagtgaccaaaagagaccagtcagcg
cctcagcttctggagctgctggcaaacgaccgactgagtcaggccggccacatgctgctc
aatctgagcactgacccgtccaccttgatcggagaggtggtggaggcgtttgggaaccgt
tgcggtcaggactctctgtttgaactcctctttggacagcaggcctcttctgcatcttcc
tttattgccaatgatgacattcattccattaaggcaatgactccacagatctctcagata
gctgggtgggatgctggctccatcctgctgcacgctggtgacttgcaacatttgagctgg
ttggggttgcagtggacccttctgggccagagaccagaactgcgggattggctgcagcag
ctctttccgaggcttaccctggaaacctccaaactggacacaaatgcaccagagtccatc
tgcgtgctggacttggaggtgtttatatatggtgtggtgttctgtagccattgtcagctt
caggagacggcaaagatcagcagtgcagtgaaccagcagcagcaacagcagctctacgag
ccacgctgcctcccccttcctcttcttcgcctcctgaccactgacagacagagggagtgg
tgggatgccatctacagcctcattcacaaacaagctgctcctggcatgtcagcaaaattg
cgaatgattgtgcaacatggactgaaaactctgagggccggagaaaaacatgggctccaa
ccagcactggctattcactgggctcaatgtctcagccagacggttgatggactgaaatca
tactatgaccagaaggagtacatcagccgcagtgtccactactggaaagtcgtccttcca
ctgttggacaggatcaaaaacagacacagtatacctgaacccctggaaccactcttcata
cactttcgctccaaagatactcagatctcatctgtgaagggatatgaagaggaagcccaa
atcacatatgcagttctccttgacattgaaggcaagacagaggaggccatcgctgccttg
gaaatcatcaataacatgtcgtccgcctggcatctggctcagatctaccagcggctgtca
gaggaggccagcaatggggttgaggagacacaagacaagtgcatcaccttcctgaggaag
ttcaggacctacttggccaagatctacaatgccaatgtagatgactttgacaagttgcct
gtgtccatggaggaagtttatgacctcctgaatgatgtgaaccaacagctgggggagaat
ggggaggacatggatgaaggagaggaggaggacaaggttggaagaggaccagcccattcc
acccctgctcatcccttagaaaccagtgccaccatatcccacgtcaaatttgccactccc
tccccaaataaaagcattgtctctccttccaaaagacacctgatttctccgaagacccca
cctcattgggtggaggaccagaaaagtctcctccagatgctgtgtcagcaagttgaagct
ctcaagaatgaggttcatgatctgagacacaactcttcagggagtgtaagctctcctcat
cacaagatgtatggagagagttatggagctgagggcctacaggagcctttcaccccagtc
cagtcctaccatggggcccccctaacagttgccaccacaggcccttctgtgtactacaat
caatctccggcatataactcacagtatctcctgcgcacagcagcaaatgtaacccccacc
aagggtccaatgtatggtatgaaccgtatgccacctcagcagcatatgtatgcctaccag
cagcccacacatacacctccactgcagacagccccagcctgcatttaccctcctcaagaa
caggtctttggtgcccctcttcgatttgaatcaccagccactaaccttctatcgccatat
agtgaagaatattacggccagagtgtaccccaacaaacaacaaaccctcccttacctgaa
cctggttacttcaccaaaccgtctgtagtccctgttcagccacaaaagagcattgtgggg
aagcctatgaattttgggaagctctccttcagccagcaggcacctgctgaggttcccaaa
gtgcctagttttggagcaagcgcagttgcccagtcaacaccttcagctgcgtttaaattt
aactccaactttaaatccaacgatggagatttcactttccctgcttctcaggccaagcat
agtgaaagtttgcttggtcttcttacgtcagacattcccactaaaacagatactgttcca
gagaagcccacaggtcaagagcagccccccagccaaacaggcatcttcacctttggcaat
acaaattctaatggcttctcctttgctgatgcagcacagagtacaaatactggaagtgtg
tttggaaacgtggaccagccatttaaatttggggataccaagccagtgttcggtctgccc
acgtctgcagcagaagaggaaagggcagcggacagcgacaatgacagcacacatgctgat
gaagatgaggatggtcctcactttgaacccattgtaccccttccagacaaagtagatgtg
aaaacgggtgaggaagaagaggaggagatgttttgcagtagggcaaagctgtatcgattt
gacacagattcaaaagagtggaaggagcggggcattggaaacattaaaatcctaaaacac
agcactaaaggaaaggttcgcctcttaatgaggagggaacaggtccttaagatctgtgcc
aatcattacatcaatactgatatgttactgaaaccgaatgctggctcggacaaatcctgg
gtctggaatgccattgattatgcagacgaagagcccaagcctgagcagctagccatccgc
ttcaaaaccgtagatgaggcatctcttttcaaggccaagtttgaggaagctcagaaaatt
gtgttaagatcatcagaaaagcaagatcaacaggagaagaaagagagcttaccagcttcc
aatccaccgtcaacattggcagcacagtttgcacttaaagaaggggaatgggactgtgat
gtgtgctgtgtaagaaataaaccccaggatatgaagtgtgctgcttgtcaaattgccaat
ccgaattgttcatcttcatcaaagccagacattcaggctgcaaatgaaaccaaagccagt
ccctttactttcaagtttggaactgactcatcaaagcccactagttctggctctccattt
actgggtttggtggttttggagcttccgtaccctctgcatttacatttggcacaggcacc
tcaaaacctgctgacacagtaaccagtgcatttggttctggctttggggttcagtttggc
aagaagccagggcagtgggattgtggcacatgttctgtagcaaatgaggcctctgcagac
agttgtgtttcttgtaaagctctgaaagtgtcacctaaaaaaactgccacagaacaagtg
gcaccagctgcaacagcacctgtagttaaaccctcagacgttgttgacattgggtttgct
gcccagtttagcaagaagccagggcagtgggactgtgacatatgcgaagtaagaaatgaa
gcatcgactgacaaatgtgttgcctgtaacactcccaaccctactgctaaatcaaaagag
gatactccagttgcatcctccctgtcaacagcattagttatgccaggatttggagcagaa
cttgcaaagaaggatgggcagtgggactgtaattcctgcctggtcagaaatgatgcatca
gctactgaatgtgtttcttgccacacctgtcgtcctttagaagaaatgtttgccaagaag
gatggagaatgggactgtgacatgtgtctggtgagaaatgatgcctctgccaataagtgt
gctgcttgtcagacaccaaatcccaatgctaaaagcgttaccagtgctgcaccctcagct
tccaactttaagtttacctttggagacaagagttcatcaagccagcctgctggaactgga
tttacaatgccttttggaacaagtagcacttttggaacaagtagcacttttcagtttggt
caaaacaaagataccagctcggctgcttctttcaagtttgaggttcctcaatctggatct
agtaccacaagttcttcgggcttctctttctcaatgcccattccatctggtggctttaag
tttggcattcaggaagctacaaaagaaacttcctcaactgataatgaaacggccccaaca
gtgtcagcttctagttttcttaaaagcatagctgacaaacacaaggagaaagaagatgta
tgtacacccttagtagatcaaacagggaaagatccaaatccattaattgctggaaaaacc
gatacgttcagttttgcagacctggcacaaaccactggagaagacttcaagtttggccag
aaagacccagatttccaaggtttctctggggctggtgagcagttgttctcggccttcccg
gcaacccccaccaagacagatgccacacatgatctggaggaagatggcatgtataaaaca
gaagaaaatgatgatatccagtttgaaccagtggtccagatgcctgacaaggtggacctg
gtcacaggggaggaagatgaggtggttctatactctcagcgtctcaaattgttcagattt
gactctaacacgagtcagtggaaagagcgtggtgtaggagtccttaaattcctaaaaaac
accagtaatggcaggctaagggtgctgatgagaagagagcaagttctgaaggtttgtgcc
aaccactggatcaacaccaccatgaatcttaagcctctggcaggctcagacagggcgtgg
atttggatggccaatgacttctctgacggggatgctaaaccagagcagttggctgccaaa
tttaaaaccccagagctcgctgaggaatttaaagaaaagtttgaagagtgtcaaagactt
ctcttagacatccctctacaaaccccgcacaagcttgttgacacaggtagaacagcacat
ctcattcaaaaagcggaggaaatgaaatccggtttgaaagacctaaaattcttcctgaca
gatgagaaaacaaagatcaaagatgacgaaagccaggaagagccttcaagccttgtaatg
aagtctcacggtgaaaccactggccccaccctagagtgggacaactatgaccttagagat
gaagcgttagatactactactgactcatcagtctatgcctctcctctcgcaagcagtccc
ctgagaaagaaccttttccggtttggagaatccactgctgggttcaacttcagcttccag
cctggcattagcccctccaaatctcctgctaagctaaaccagagcagagcctcagtgggc
actgatgatgagcaggatgtaacccaggatgaggagagagatggccagtactttgaacct
gtggtccccttgcctgatttggtggatatttccacaggggaagaagaggaactaatagtc
ttcagtcacagggccaaactgtatcgctacgacaagggactgagtcagtggaaggagagg
ggaattggagacctcaagatcttgcagaattataagaccaaacgagtgaggttgataatg
aggagggaccaggtactcaagatctgtgccaaccactggatcacagctgccatgaagctg
gaacccatgaagggcgctgagaaggcctgggtctggagtgccttggactttgctgaagcc
ggggaaagtaatattgagcaactggctgtgagattcaaactgctggagactgcaaacgca
tttaaacaggtctttgaagaggccaaggttgcacaagaaaagggggaacttatgaccccc
gtgacttccagagtcgccacacctcaagacagtgaacccacaacatcagaaaaggatgct
acacctgtgtgtgggaaagcagccattactgttctggaagagaccacaaaggaacgtaca
gagctttccaccgacagtcaaccatgcacagctgggtctcagagtccaggcaacccctcc
aagggagtggtgtcgccccctaaatttgtgtttgggactcaaagccttcagaagattttt
ggcagtccaaaatctcactctgacgacggtgaatgcggtttgaagcccaaagattctgga
catcctgccaaggctccacctgcacaacctgcattcaaaatcccagagaaaggccaagcc
agtgctaggtctgatgatgaagatgatgatgaggtggagattgtgtacgtcagggaaccc
accgctgaacaggctgctttagccaggaaactcctgctgcctctcaccttcttctgctac
cagaatgaaccaggctacaccagcgacgatcaaactgatgatgaggactatgagtcagca
gtgaaagccttgaatggaaagctctaccccgatcctccagagagaaaggcaggagcatgt
ggcgatgagtcagactgccaggtggtctgggaaaagaaaccgacaccagaggaggaagag
aaggccaaaagcctccagcttccacccaccttcttctgtggcctgagcaccacagacagt
gacccggatcacgacaagtctgaagactttgagacagaagtacgaaaggcacaacaagac
ctggaggccgagttcaacaaacctgacatggtctccagcagtcctgcagaagagacaaca
tcagacccatcatctagcagcgcggaggctgcagtcagcatgtctacaccagaggaccag
acctccgaccagccagcagacacgcagagcgaagctccgagaagcagctctcccattgac
ctgtcaactaagaagagccaagagccagactctaacacagaaacttccgcagctacaact
gctacgacaacaagtcaagattcctctggcttcggtttcaactcattgggaggcttttct
tttgctgacttggccactaaaacagaaggatttgcatttggagcaaatgactccaacttc
tcctgggcaaacgcaggagctacagtatttgcaggtcctgcagcacccaaaaacgacgga
gatgtagaggggagcgatgaagaagaaggttctaataatccagacattcactttgagcca
atagtgtcactgccagaggtggagacaaagtctggagaggaagatgaggaaatcctgttc
aaggagcgtgccaagctgtaccgatgggaccgggaccttggccagtggaaggagcgtggc
atcggtgacctcaagatcctcttccacccagctaaacatttctaccgaatcctgatgaga
agagagcaggtgctgagagtttgtgctaaccacacgatctcagaggcgatggaactcaaa
cccctgaatgcctcagctaactcactgctctggacagccaccgactactcagatggggat
ggcgcagtggagcaactggcagcaaagttcaaaacccctgagatagccgaatccttcaag
aagattttctgcgagtgtcagagccgcatgggccaaagtagtgacgatccctcgagtgtc
ttttcaccgcagatgtctaaaattcaagaacactccagagactctaacccaaaggtgttc
ctcacagtgacagcagacgcagagccactaggcaccatcaccattgagcttttctcccat
attgttcccaagacagcagagaacttcaaggttctctgcactggagagaaaggcttcggg
ctgcggaactccatcttccacagggtcataccagactttatgtgtcagggtggtgacatt
accaaaagcgacggcacaggaggcaagtccatctacggcagccagtttgaagatgagaac
ttcgacgttcggcacacaggcccgggcatactgtccatggccaaccgagggcgtgacacc
aacaactcgcagttcttcattaccctgaagaaggctgaacacctggacttcaaacacgtg
gctttcggctgggtgcgggaaggcatggatgtggtacagcagatgggagcgctgggcacg
aagggaggcccaccctcgaagaagcttgtcatcacagactgcggacagctctag
DBGET
integrated database retrieval system
