Scomber scombrus (Atlantic mackerel): 133993403
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Entry
133993403 CDS
T10651
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
KO
K07888
Ras-related protein Rab-5B
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04137
Mitophagy - animal
ssco04144
Endocytosis
ssco04145
Phagosome
ssco04148
Efferocytosis
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133993403 (rab5b)
04145 Phagosome
133993403 (rab5b)
04137 Mitophagy - animal
133993403 (rab5b)
04148 Efferocytosis
133993403 (rab5b)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133993403 (rab5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133993403 (rab5b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133993403 (rab5b)
04031 GTP-binding proteins [BR:
ssco04031
]
133993403 (rab5b)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab GTPases
133993403 (rab5b)
Endosome - Lysosome transport
133993403 (rab5b)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133993403 (rab5b)
Exosomal proteins of other body fluids (saliva and urine)
133993403 (rab5b)
Exosomal proteins of colorectal cancer cells
133993403 (rab5b)
Exosomal proteins of melanoma cells
133993403 (rab5b)
GTP-binding proteins [BR:
ssco04031
]
Small (monomeric) G-proteins
Rab Family
Rab5/17/22/31 [OT]
133993403 (rab5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
GTP_EFTU
Gtr1_RagA
RsgA_GTPase
MMR_HSR1
SDR-like
AAA_16
Tfb2_C
Motif
Other DBs
NCBI-GeneID:
133993403
NCBI-ProteinID:
XP_062288314
LinkDB
All DBs
Position
13:7363542..7367082
Genome browser
AA seq
217 aa
AA seq
DB search
MSSRGSGGRSNGTLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLA
QSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQ
RQASPNIVIALAGNKADLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAK
KMPKTDTQNPTHAARHRGVNLQDPDAHSNRACCGGGN
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagagggagtggtggccgctccaacggcacactaccacagaccaagatctgc
cagttcaagttggtgctgctgggtgacatggccgtgggcaagtccagcctggtgctgcgt
ttcgtcaagggacaatttgatgagtttcaagagacaaccattggagctgcattcctggcc
cagtcagtgtgtctagatgatactacagtgaagtttgagatctgggacactgcaggacaa
gagcgatatcatagtctggcccccatgtactaccgcggggctcaggctgctatcgtggtc
ttcgacatcactaaaccggagacttttgagagagccaaggcctgggtgaaggagctgcag
aggcaggccagtcctaacattgttatagctctggctgggaacaaggctgacctggcagag
aagagactagtggagtatgaggaagcccagacatatgctgaagacaccggtttgctgttt
atggagacctctgcaaagacagccatgaacgtcaatgagctcttcctggctattgcaaaa
aagatgccaaaaacagacacccaaaaccctacacatgcagcaagacaccggggagttaac
ctccaggacccagatgcccactcaaaccgagcctgctgtggtggtgggaactag
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