Scomber scombrus (Atlantic mackerel): 133993419
Help
Entry
133993419 CDS
T10651
Symbol
dync1i2a
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04145
Phagosome
ssco04814
Motor proteins
ssco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133993419 (dync1i2a)
09142 Cell motility
04814 Motor proteins
133993419 (dync1i2a)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133993419 (dync1i2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ssco03036
]
133993419 (dync1i2a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133993419 (dync1i2a)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
133993419 (dync1i2a)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
133993419 (dync1i2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_EML
WDR55
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
EIF3I
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_IP5PC_F
HB_ELP1
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
133993419
NCBI-ProteinID:
XP_062288344
LinkDB
All DBs
Position
13:15820760..15839263
Genome browser
AA seq
627 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEEERKKKEADTLKDAALHQDDSDLEKKRREAE
ALLQSMGITPEVPVVPPPMSPTAKSTGTPSEAGSQDSDGAVGPRTLHWDSDPSTLQLHSD
SELGRGTPKLGMAKVTVVDIPPRETVSYTKETQTPVMTQQKEEEEEEEEISPPQPVIETQ
TEKLDQAEEEEAPPHELTEEEKLQILHSEEFVNFFDHSTRIIERALSEHVDVFFDYSGRD
LEEKEGEIQAGAKLSLNRQFMDERWSKHRVVTCLDWSPQYPELLVASYNNNEDAPHEPDG
VALVWNMKYKKTTPEYVFHCQSAVMSAAFAKFHPNVVVGGTYSGQIVLWDNRSNKRTPVQ
RTPLSAAAHTHPVYCVNVVGTQNANNLISISTDGKMCSWSLDMLSQPQDSMELVFKQSKA
VAVTSMSFPLGDVNNFVVGSEDGSVYMSCRHGSKAGISEMFEGHHGPITGINCHTAAGPL
DFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVDGVGHLDL
WNLNNDTEVPTASITVDGNPALNRVRWAQSGREIAVGDSDGRVLVYEVGEQIAVPRNDEW
TRFVRTLAEINENRDDAEELAAQRLAA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaaagcgagctgaaagcagagcttgaaaggaagaagcaacgcttggcacaa
atcagagaggagaagaaaaggaaggaggaggagcgcaagaagaaagaggcggacactttg
aaagatgcggcacttcaccaggatgactctgacctggagaaaaagagacgtgaagctgag
gccttgctacagagtatgggcataaccccagaagttcctgttgtccctcctccgatgtct
cccactgccaaatcgacgggcacgccaagtgaggcagggagccaggactctgatggagct
gtgggacccaggactctgcactgggactctgacccgtccacccttcaacttcactctgat
tctgagctggggaggggaactccaaaactgggaatggccaaagtcacagtggtggacatc
cctccacgtgaaactgtgtcctacacaaaagagacccagacacctgtcatgacccagcaa
aaagaagaagaagaagaggaagaagaaatttctccgcctcaacctgttattgagactcag
actgagaaactggaccaggcagaggaagaggaagcacccccacacgagctgacagaggaa
gaaaaactccagatcctgcactcagaagagtttgtgaatttcttcgaccacagcactcgc
attattgagcgggctctatctgagcatgtggacgtcttctttgactacagtggtcgtgac
ctggaggagaaggagggagaaatccaggccggggcaaagctctctctcaacaggcagttc
atggacgagcgctggtccaaacatcgtgtcgtcacctgcctggactggtccccccagtat
cctgagctcctggttgcctcatacaacaacaacgaggacgctcctcatgagccagatggc
gtggccttagtgtggaacatgaagtacaagaagacgacaccggagtacgtcttccactgt
cagtctgctgttatgtctgctgcgtttgccaagttccacccgaatgttgtggtggggggc
acgtactcggggcagattgtgctgtgggacaacaggagcaacaagaggaccccagtgcag
aggactccactgtctgcagcagcacatacgcacccagtgtactgtgtgaatgtggtcggc
acccagaatgccaacaacctgatcagcatctctactgacggcaagatgtgctcctggagc
ctggacatgctctctcagccacaggacagcatggagctggtgttcaagcagtccaaagct
gtagctgtcacctccatgtccttccctctcggagatgtcaacaattttgtggtgggcagc
gaggacggctctgtctacatgtcgtgtcgtcatggaagcaaagcgggcattagtgagatg
tttgagggccaccacgggcccatcacagggatcaactgtcacacagctgcagggccgctg
gacttctcccaccttttcgttacctcctctttcgactggactgtcaagctgtggagcacc
aagaacaacaagccactctactcatttgaggataactcggattacgtgtatgatgtcatg
tggtctccgactcaccctgctctgtttgcttgtgtggacggtgtgggccatctcgacctc
tggaacctcaacaatgacactgaggtccctaccgccagtatcacagtggatggtaaccca
gccctcaacagggtcagatgggctcagtctggcagagaaattgctgtgggagactctgat
ggacgagttcttgtgtatgaagtcggagagcaaattgcggttccacgaaacgacgagtgg
acccgttttgttcgcacgctggcagagatcaacgagaacagggatgatgcagaggagctg
gcagctcagcgcctggctgcctga
DBGET
integrated database retrieval system
