Scomber scombrus (Atlantic mackerel): 133993646
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Entry
133993646 CDS
T10651
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
133993646 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133993646 (trpv1)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133993646 (trpv1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
133993646
NCBI-ProteinID:
XP_062288615
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Position
14:complement(7082713..7097986)
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AA seq
780 aa
AA seq
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MSKSEMFGFSLETDDRTEDEKSRNKAAKKDGLVSALGLGQEAPKTPMDTDYQEEMEETKP
KIRFNLNFDKGIQGVQNDGRRDSKTFNIDRLFEAVASGDVRNLVGLYDYLHRSMKTLSDS
LYQSYGKTALMKALLHLRDGKNETVELLIDISEKLGDIKEFVNAAYTNGYYKGQTALHIA
IERRSLSYVKLLVSKGADVHAKACGKFFQPHDGPYFYFGELPLSLAACTNQPDMVDFLLK
NDYQHADAQLTDSQGNTVLQALVMVADNTKENTEFITSMYDRILKTTAQLYPNMRLEDIE
NNNGLTPLKMAAKTGKSGLFSHILQREFHESKTKHLSRKFTEWVYGPVHCSLYDLASVDS
YEKNSVMEILVYGSGIPNRHEMLQTEPLGRLLEEKWKMFAGQMFFFNFLVYLMYLIIFTV
VAYHKGEKPPFPLKHNKNGYLYFAGQLLAVLANCFFFVMGIIDMKRKRPKLQTLLIDGYY
EILFFLQSVLFLISAALYLSGRQEYLGFLVLCLALSWVNLLYFSRGNRHMGIYSVMIQKM
ILGDILRFIFVYIVFLFGFSAAVVTLLTCPAQNTSRQQGRFFLPVDPDEECVTGNFRTIS
NTTLQLFKFTIGMGDMEFTDEYQYIEVFYILLIFYIILTYILLLNMLIALMNQTVEKITN
ESTSIWKLQRAITILDIEKRLSGCLRRRLRCGVEKNMSTAAGGGRRRCFRVEEVNWNKWN
INLGKINEDPGCWDGVQQPSSDTSPHRINRGRSWRDLFEGSRRRRTFKSTEMSPLSTTPV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtcagagatgttcggcttctctctggagacagatgacaggacggaggatgag
aaatcacggaataaagcggcaaagaaggacggcctggtctctgctttgggtttggggcag
gaggcacccaaaactcccatggacaccgattaccaggaggaaatggaggagaccaagcct
aaaatcagatttaatctcaattttgacaaaggaattcaaggagtgcagaatgatgggagg
agagacagtaagacatttaacatcgataggttgtttgaagcagtggccagtggggatgtc
agaaacctggttggcctgtatgattatctacacagaagcatgaagacactctcggattcc
ttgtaccagtcctatggtaagactgccttgatgaaggctttgctgcacctcagagacggc
aagaacgagacagtggaattattaatcgacatctcagagaagttgggcgacattaaagag
tttgtgaatgcagcttacacaaacggctactacaaaggccagactgctctccacatagcc
atcgagaggaggagtctttcctatgtcaagctcctggtcagtaaaggagcagacgtccat
gccaaagcatgcgggaaattcttccagccacatgacggcccctacttctactttggtgag
ttacctctgtctctggcagcctgcaccaaccagcccgacatggtggacttcctgctgaag
aacgattaccagcacgctgacgcacaactgacagactctcaaggcaacacagtgctgcaa
gccctggtgatggtggccgacaacaccaaggagaacacagaattcatcaccagcatgtac
gatcgcatcctaaagaccacagcccaactgtatccaaacatgaggctggaggacattgag
aacaacaatggtctgacacctctcaagatggcagccaagactggcaagagcgggcttttc
tcgcacatccttcaacgggagttccatgagagtaaaaccaaacatttgtcccgtaaattc
actgagtgggtctacgggccggtccactgctccctgtacgaccttgcctctgtggactcg
tacgagaaaaactcagtcatggagatcctggtctacggcagtggcattcctaaccgtcac
gagatgctgcagacggagcctctgggccgactgctggaggagaagtggaagatgtttgca
ggtcaaatgtttttcttcaacttcctggtctacctcatgtacctgatcatcttcacggtg
gtggcctaccacaaaggagaaaagccgccatttcccctcaagcacaacaagaatggctac
ctgtattttgcgggccagctactggcagtgctggcgaactgctttttctttgttatgggg
ataatagacatgaagaggaaacggccaaagctgcaaacgttgctgattgatggatattat
gagattcttttttttttgcagtcagtccttttcctgatttccgccgcgctatatctgagt
ggacggcaggagtacctcggcttcctggtgctgtgtctcgctctcagctgggtgaacctg
ctctacttctccaggggcaacagacacatgggcatctatagtgtcatgatacaaaagatg
atcctcggtgatatcctgcgctttatttttgtctacattgttttcctctttggattttca
gcagcggtggtcactctgctcacctgccctgcacagaacaccagtagacagcagggacgc
ttcttccttcccgtcgaccctgatgaggagtgcgtaacaggcaatttcagaaccatctcc
aacaccacactgcagctcttcaagttcactatcggcatgggagacatggagttcacagat
gagtaccagtacattgaggttttctacatcctcctcatcttctacatcatactcacctac
atcctgctgctcaacatgctcatcgccctcatgaaccaaaccgtggaaaagatcaccaac
gagagtaccagcatctggaagctgcagagggccatcactatcctggacatagagaaaagg
ctgtctggctgtttgaggaggaggcttcgctgtggggtggagaaaaacatgagcactgct
gctggaggaggccgtcgccgctgcttcagagtggaggaagtcaactggaacaaatggaac
atcaacctgggcaaaatcaatgaggatcctgggtgctgggatggtgtccaacagccctcc
tcagacacctcgccacacagaataaacagagggaggagctggagagacttgttcgagggc
agtcggcgacggcggacattcaagtccacagagatgagtcctctgagcaccacgccagtt
taa
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