Scomber scombrus (Atlantic mackerel): 133993660
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Entry
133993660 CDS
T10651
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133993660 (pcf11)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133993660 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133993660
NCBI-ProteinID:
XP_062288637
LinkDB
All DBs
Position
14:29197502..29213364
Genome browser
AA seq
1596 aa
AA seq
DB search
MDCLLIHGGAAVASPAGSKMEDACREYQSSLEDLTFNSKPHINMLTILAEENLDFAKDIV
AIIEAQISKAPTAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFLCVFEKVDENTRKSL
FKLRSTWDEVFPLKKLYALDVRVNSVDSAWPIKPLPPTVNASIHVNPKFLKQSESETPSS
RPVTTPPATPTPAPAPTPPPPPPSAAAAPPAAAPAPVAPGAAVSQSSLTQEQLIRQQLLA
KQKQLLELQQKKIELELEQTKAQLAGGFVLPTSVSSTLSASSAAALKLSSQTVPVVRPWI
PPQTDTKPSTRDPRLNRSGPPAAPQPKEQPAGKKDGPPLTGSPAVTPEKRPAEKPVRPDK
ARLPRKEIQEEKKSKSPSPLAKNLQIKNKHAEAEAPKSADGTKKDPRLRKRPQEKSGEAK
EDEQKEKKRCSDKKEREEALRASEPPRSTKPKLLNGSVPKHERDETADKLEFKAGGNART
HARKRTRSRSRSPASSPKRKDRRSPKSRARSSSLSPSPSHKPGKPRRIRPDEPPHGKLGR
EDRLAPKKNQSESRRSKRPAEERHSESRDSHSPRGHDGVGKDGKDAPHRWRSGWEENKHL
KLAEDPHVKPAPQRHKPYSTPTRPTTPRTPKHRLSVDANMQIPDVLNSASKKDLLRRASK
RLESGEISQEDFLNMAHQIKHFFQYQEEKQQRSESWDDSDDFPGKKLPPLPLLAAARDGV
EAAYYEHKSKLRKTQVTHRAAGEEWEGEDSPEEAEDEAPGEKAAAAHLATHKYNRPPRER
PGERRSKEREEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPREPSEREWTSPLTE
RQRDEQKSGYDAPRRYAESRHPNPRRPEGPPPAGTVVHRKCPSPGGLDASVPRFERERLS
PLHQKDAADASPVPRFESPNSEHSDDGPISLDAAPPPHPAATPKSILKAPARVGPLPSVR
QHGDSPGHTPPHDGGHPPTRYDGPGHMGPARPHPPGRYEGGPGRYDDPSRFEGPGRFDGG
APHHNMADRFDGHMTHGPMRGGEGLGRFDGPPHPQAPVRFQGPGPGHFEGPMQRFDAPPH
FDNVAPGSGPMGFQQQRPLRFENPQNQMGPMRFDGPGPMRFDGPRFDMPHQGGPPRYDCP
TGQQGPPRFGPQHNLQPPMRPMAPPHYDSPIPPQQNYNMAPQRFPEPMNPQFPAGPMAFP
VQPNLQPAGNFNLQPAPFNQPAAAPFYNPAAPAVTMQQPVNMMNMNTPFLPQSSVPFGQQ
TPQVAPTENHFGQVDVNDLLSKLISNGIIKPSQPDATATASNEVVVAPVVAPPPVVVEEE
EEEEQEAEEDEDLPDLTSFTIDDMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDLYADHL
DWHFRQNHAGKVASKKITHRRWYYGLTDWVEFEEIADLEERAKSHFFEKENEEEVQKSQA
AAKEKELPMVKATKDQVGESCEICQEAFETYWVEEEEDWFLKDAVRVDDKNFHPSCFEDY
KNTSSYLDVTPSPNKLLTDHPLSAFIKTEEEEETSCAVAAAAAAAVAAAAAAAAAAAAAA
AASVKQEVDLEGGDLPEVKKEESDVLTEPTDGAAAP
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatccacggtggtgcagccgtagcttcccccgctggctctaagatg
gaggacgcctgcagagagtaccagtcctccctggaagacctgacgttcaacagcaagccg
cacatcaacatgctcaccatcctggcagaggagaacctagacttcgccaaggatatcgtc
gctattattgaagcacaaatcagcaaggctccgactgcagagaagctgccagttttgtac
ttagtggattccatagtgaagaatgttggaggggaatacctcgcagtgtttgctaaaaac
ctaatcacttcatttttatgtgtctttgaaaaggtggatgagaacaccaggaagtctctg
ttcaagctgcggtccacgtgggacgaggttttcccgctgaagaagctgtacgcgctcgat
gtccgcgtcaactcggtggactcggcgtggcccatcaagccgctgccgcccaccgttaac
gccagcatccacgtcaacccaaagttcctcaaacagtctgagtcagagacgccgtcctct
cggcccgtcaccactcctccggcgacgcccactcccgctcctgctccgactcccccgcct
ccaccgccatcggcagcagcagcgccaccagcggccgctcccgcccccgttgcccccggc
gccgccgtcagtcagtcgagtctgacgcaggaacagctgatccgccagcagctgctcgcc
aagcagaaacaactgctggagctgcagcagaagaagatcgagctggagctggagcagacc
aaggctcagctggcgggggggttcgtgctgcccacctcagtctcctccacgctgtcggca
tcatcggctgcagcgctgaagctcagcagtcagaccgttcccgtggtccgaccctggatc
ccccctcagaccgacactaagccgtccaccagagacccccgtctgaaccgctccggcccc
ccggccgccccccagcccaaagaacaacctgccgggaagaaggacggcccccccctcaca
ggaagtcccgctgtgacgccggagaaacggccggcggagaaaccggtccgacccgacaaa
gcccggctgccgaggaaggagatccaggaggagaagaagtccaagtccccgtccccgctc
gccaagaacctgcagatcaagaacaaacacgccgaggccgaagccccgaaatcggccgac
ggcaccaagaaggacccgcgtctgaggaagcgtccgcaggagaagagcggcgaggcgaag
gaggacgagcagaaggagaagaagagatgcagcgataagaaggagagagaggaagctctg
cgggcgagcgagccgccgcgctccaccaaacccaaactgctgaacggttctgttcccaaa
cacgagagagacgagaccgccgacaagctggagttcaaggccggcggcaacgcccgcacg
cacgcccggaaacgcacgcgctcccgctcgcgctcgcccgcctcgtccccgaagaggaag
gaccgccggtcccccaaaagcagagcgaggagcagctctctgtccccgtcgccctcgcac
aaacccgggaaaccccgcaggatccgacccgacgagccgccgcacggcaagctgggccgg
gaggaccggctcgcccccaaaaagaaccaatcggagagcaggaggtcgaagaggccggcg
gaggagcgccactccgagtccagagactctcattcgccccgcggacacgacggcgtcggg
aaggacggaaaagacgctccgcaccgctggaggagcggctgggaggagaacaagcatctg
aagcttgcggaggaccctcatgtgaaacctgcacctcagagacacaaaccctacagcacg
ccgacccggcccaccaccccccgcacccccaaacaccgcctcagcgtggacgccaacatg
cagatccccgacgtcctcaactcagcgtcgaagaaggatctgctgcggagggcgagtaaa
cgtctggagagcggtgagatctctcaggaggacttcctgaacatggcgcaccagatcaaa
cacttcttccagtatcaggaggagaagcagcagcgctccgagagctgggacgactccgac
gatttccccggcaagaagctgccgccgctgccgctgctggcggcggcccgtgacggcgtc
gaggcggcgtactacgagcacaagtccaagctgaggaagacgcaggtcacccaccgggcg
gccggggaggagtgggagggcgaggacagtccggaggaggccgaggacgaggcgccgggt
gagaaggcggcagctgcacacctggcgacgcacaaatacaaccggccgccacgggagaga
ccaggtgagcggaggagtaaagagcgcgaggagccgcggccgccgctcggcccgatgatc
gaggagtacaaccacgggaaggagttccccacgctgaagtctctgccgggccttcgcttc
cgcaggagagccgacccacgagagccgagtgagcgggagtggacttcgccgctgaccgag
cgccagcgcgacgagcagaagagcggctacgacgcgccgcggaggtacgcggagtccaga
cacccaaacccccgcagacccgagggcccgcccccagccggcaccgtggtccacaggaag
tgtccgagcccgggggggctggacgcgtccgtcccgaggttcgaacgcgagcgcctgtcc
ccgttgcaccagaaggacgcggcggacgcgagccccgtcccgcgtttcgagagtccgaac
agcgagcactcggacgacgggcccatcagcctggacgccgccccccctccgcaccccgcc
gctacccccaaatccatcctgaaggctccggcccgcgtgggcccgctaccgagcgtccga
caacatggcgactcccccggacacacgcccccccacgacgggggccacccccccacccgc
tacgacgggcccggtcacatgggccccgctagaccgcacccgccgggccggtacgagggc
ggccccgggcgctacgatgacccgtccaggttcgaggggcccggcaggttcgacgggggg
gcgcctcatcacaacatggccgacaggttcgacggtcacatgacacacggtccaatgagg
ggcggggagggtttgggccggttcgacggccctcctcaccctcaggcaccggtgaggttc
caggggcccggtccagggcactttgagggcccgatgcagcgcttcgatgccccgccacac
tttgacaacgtggctcctggatctggaccaatgggcttccagcagcagcgcccgctacgc
tttgaaaacccccagaaccagatgggccccatgaggttcgacggccccggtccgatgcgc
ttcgacgggcccaggttcgacatgccccatcagggcgggcccccgcgctacgactgcccc
accggccagcaggggcccccccggtttggtccccagcacaacctgcagccccccatgagg
ccgatggcgccgccccactacgacagccccatccccccccagcagaactacaacatggcc
ccccagcgtttcccggagcccatgaaccctcagttccccgcgggcccgatggcgttcccg
gtgcagccgaacctgcagccggcaggaaacttcaacctgcagccggctcccttcaaccag
cctgccgccgcccccttctacaaccccgctgcccccgccgttaccatgcagcagccggtg
aacatgatgaacatgaacacgcccttcctgcctcagagctcggtgcctttcggacagcag
acgcctcaggtcgcccccactgagaatcacttcggtcaggtggacgttaacgatcttctg
tccaaactcatctccaacggcatcatcaaaccctcgcagcccgacgccacggcaaccgcc
agcaacgaagttgtggtggcgccggttgttgcgcctcctcctgtggtggtggaggaggag
gaagaggaggagcaggaggcggaggaggacgaagatctgccggacctcactagcttcacc
atcgacgacatgaaacagcgttatgaaagcgtggtgacgaagctgtactcggggaatcag
tgctgtctgtgcagcatgaggttcaccgccgctcagaccgacctgtacgccgaccacctg
gactggcacttcagacagaaccacgccggcaaggtggccagcaagaagatcacacaccgc
cgctggtactacggtctgacggactgggtcgagttcgaggagatcgccgacctggaggag
cgagcgaagagtcatttctttgagaaggagaacgaggaggaggtgcagaagagtcaggcg
gcagcgaaggagaaagaacttccgatggttaaagcaaccaaagatcaagttggagagtcg
tgtgaaatctgtcaggaggcgtttgagacgtactgggtggaggaagaggaggactggttc
ctgaaggacgccgtccgggtcgatgacaagaacttccatccttcctgtttcgaagattat
aaaaacacgtcgtcgtatctcgacgtcacgccgtcgcccaacaagctgctcaccgatcat
ccgctgagcgccttcatcaagaccgaagaagaagaagagacttcctgtgccgttgccgcc
gctgctgccgctgccgttgccgccgctgctgccgctgcagctgccgctgccgctgccgct
gccgcctcagtgaaacaggaagtggatcttgagggcggcgatcttcccgaagtgaagaaa
gaggagagcgatgttttaacggagccgacggacggagccgcggcgccgtga
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integrated database retrieval system
