Scomber scombrus (Atlantic mackerel): 133993669
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Entry
133993669 CDS
T10651
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
133993669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133993669
03036 Chromosome and associated proteins [BR:
ssco03036
]
133993669
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
133993669
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133993669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
133993669
NCBI-ProteinID:
XP_062288655
LinkDB
All DBs
Position
14:10051297..10074576
Genome browser
AA seq
1914 aa
AA seq
DB search
MSAAMLSTTSSKLNVLVNKLHEYLAHSTVEDSNGTPSSADADGLTNRGFSPRNSTGHTVT
EAGVDTRYSRRKPSVVIKHSGLDESGDSNGSEDVELPINAYGQLDITRLPKGTVMVRPEP
VENGRDDFRGPEFRSRKSSALRKEFSRRRGGVERMGIVSCTACGRQVSQFRKDSLYQHPV
LKVLICKSCYKYYLSDDISKDPDGMDEQCRWCAEGGNLICCDFCSNAFCKKCILRNLGRK
ELSGILESKWYCYVCSPEPLFDLVMACDNVIETTECMWHQQRRRNRVVPEKSELYGILPH
LPQNIPMDKWDHSGMDGNVVFNYNTLQTSKDSTKKAKHLVESTNALNRTFISFIHSATRN
KPTPGIRSLYLKSFLTVVKGLRKSLSALEDSLKEEFTDLDVLNCWDKLLSDEFDAQPVTE
ADTELDTADERCLRELQKLAAEHSQDDDSDSKVYTDGRGALDCDREGVDSSSRKARLKAQ
KIGLKSSESGVNMTKKLVVKLTPVLVEKESSSNSSKTETDMHMEDKKLESKDLSEDEESG
VACAKADNKMSNDNSNASLPLEEEQGNRRSPRVKTTPLRRPSDVKAKTSLSTADSDSDSD
PEGTPSTVPAKNTEEQSLSRARDDSDSDEVPAALLERAAMTHSSDEPQSDEDAGKASTKV
AKKCLFWLTKNTPISPEKMRRKRKMLDRSPESDSSDRRTKARRESGTDSSSDDQDSQKKI
QHLNTLRSMGKPHLVKREEEGVVRKQGRIQARKTKTKSRREATESSSSSSEDEHDDDSGS
DGDDQKMKPITEDVALLGAAGFQQSSGDEEQSGPLWAAEEDDDPENRIAKKILLAQIKAN
YSSDDDISSDDDMQEEESESEGAEVKQGNEENGTDENGEGLASASSQSGSDGPKSRHHLL
RHKLTLDEGTSSDKAAAEGEVEKKEGKKKASCIDLSTDSESDGDNYELELEEMEMSEELS
QSEDEAGEKKPNRLSTKVKSPRSNDKKEQMLCILLSDSSTEKSDQEDTDEGTVDSKGTPK
GRKKIRKILENENLRAETQEALREEEERCKRLADREQQMADTREIIVIEDELSQVPCPIT
TKLVLDQDEETKKPLVQVHRNLVTRLKPHQVDGVQFIWDSCCESVKKANSSPGSGCILAH
CMGLGKTLQVVAFLHTVLLSKNLNFRTALIMCPLNTVLNWVSEFKKWQGNMGEDIVKVTE
LVTKKTLPDRIGALKRWQSAGGVMIMGYEMYRNMSLSQKMGDEKWKKELKSLLVDPGPDF
VVCDEGHILRNEASNISKASNAIKTRRRVVLTGTPLQNNLVEYHCMVNFIKKNLLGSLGE
FRNRFINPIQNGQCADSTPKDVRIMKKRAHVLHAMLARCVQRRDYSELTQFLPPKLEYVV
AVRVSPLQYKLYRYYLEHVTGVGFMANTPRMRTGANLFKDFQVLSRIWTHPWCLQLSYIS
KNKKGPFEKKNQVTVAALFRNKEPAVTETRLSENKDKGENADSTTALSADVVKDAPAVGG
ERATREIPGEGWFKNLLSESDAKILEHSGKMVLLFEILRMAEDLKDKVLVFSQSLISLNL
IEDFLKASHHARDSSSFKAGSWIKNIDYYRLDGSTSAILRKKWADQFNNPANVRGRLFLI
STRAGSLGINLVHANRVIIFDASWNPSYDIQSIYRVYRFGQLKQVFVYRFLAQGTMEEKI
YDRQVTKQSLSNRVVDQQQIERHFTLSELTELYIFEPDLLDDPNSKKSKRTTSVLPKDSV
LVTLLQTCKDHIVSCHEHESLLDHKEEEELSEAERKAAWAEYEAESNTASASVSSSQNAL
IGKTNEQLLKLLNKTRTDVSGAFLALQKITSHTIEQYMQLLRQQYPDLPHPEVRQKAELW
KQSDEKEQERRRAFYQDVLAKQQSLTLHIQAMLNSRRTQLMQTTANTVNQQGQT
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggcgatgctgagcaccactagcagcaagttgaatgtattggtcaacaaacta
cacgagtacttggctcattccaccgttgaggacagcaatggcacaccatcctcagcggat
gccgatggtcttacaaacaggggattttctcccagaaattcaacaggccatactgtgaca
gaggcaggagtggataccagatactccaggagaaaaccctctgtggttataaagcactct
ggactggatgaatctggggactcaaatggaagtgaggacgtggagttaccaatcaatgca
tatggtcaacttgatattactagattgccaaaaggcactgtgatggtccggcctgaacct
gttgaaaacggaagagatgacttcaggggtccagagtttcgcagccggaaatccagcgca
ctacgtaaagagttttcaagaagacgtggaggagttgaacgcatgggaattgtcagctgc
actgcatgtggccgccaagttagccaattccggaaagattccttgtatcaacatcctgtt
ttgaaagtgcttatctgcaagtcttgctacaagtattacttaagtgacgacatcagtaag
gatcccgatggaatggatgagcagtgcagatggtgtgctgaaggaggaaacttgatctgt
tgtgacttctgcagtaacgccttctgcaagaagtgtattctccgaaatctgggaaggaag
gagctgtctggcatcttggaaagtaaatggtattgctatgtctgcagcccggagcccctt
tttgacctagtgatggcctgtgacaatgtcattgagaccacggagtgtatgtggcatcag
cagcgccggaggaaccgagtagtgccggaaaaatctgaactttatggcattttgccacac
ttaccccaaaacattcctatggataaatgggatcactctggtatggatggtaatgtggtg
ttcaattataacacactacagacttccaaggatagtaccaaaaaggccaaacatttagtg
gaatcaacaaacgccttaaatcgaacatttatcagtttcattcattctgcgacaaggaac
aaaccaacgcctggcattcgcagtctgtatctgaagtcttttttgacagtggtgaagggc
ttgcggaaatcactttcagcactcgaggatagcctgaaggaagaatttaccgacttggat
gtattgaactgttgggataagttacttagtgacgagtttgatgcacagcctgtaacagaa
gcggacactgagttggataccgctgatgaaagatgcttgagagagttgcagaagttggca
gctgaacattcgcaagatgacgattctgactctaaggtctacacagatgggagaggtgca
cttgactgcgacagggagggcgtggactcatcttcacggaaagccagactgaaggcacaa
aagattggcctgaagtcttctgaaagtggggtcaacatgactaagaaactggtggtaaag
cttacacccgtgcttgtggaaaaggagtcatcctccaattcttcaaagaccgagacagac
atgcacatggaagataaaaagttagagagcaaagacttatcagaagatgaagagtcaggc
gtcgcatgtgctaaagctgacaacaagatgagcaatgacaactcaaatgcatctctgcct
ctagaagaggaacaaggtaacagacggtctcctcgcgtaaagaccacacctttgcgtcga
ccgagtgatgtcaaggccaaaacttctctttcgacagcagacagcgacagtgactcggac
cctgagggaacccccagcacagtaccagccaaaaacactgaagaacaaagtctaagcaga
gcaagagacgactctgactcggacgaagttcctgctgccctgcttgagcgagcagctatg
acgcacagctctgatgaaccccagagtgacgaggacgccggcaaagcatcgacaaaggtg
gccaagaaatgtctcttttggctcactaagaacacgccgatatcaccagagaagatgcgc
cgcaaacgaaagatgctggaccgttcccccgagtctgactcaagtgacagaagaaccaag
gctcggagggaaagcgggacagattcctctagtgacgatcaagactcgcagaagaaaatt
caacacttgaacacgctgaggtcaatggggaagccccacctcgtcaaaagagaggaggaa
ggtgtggtcagaaagcagggaaggatacaggccaggaagaccaagactaaatcccgtcgg
gaagcgacagaatcgtcgtcctcatctagcgaagacgaacatgatgacgactccgggagt
gacggagatgatcagaagatgaagccaatcactgaagacgtggccttactgggggcagca
ggcttccaacaatcatctggagatgaggagcaatctggacccttgtgggcagcagaagaa
gatgatgacccagaaaatagaatcgctaagaaaatacttttggcccaaatcaaagccaac
tactcctcggatgatgatatctcatcggatgatgacatgcaggaggaagaatctgagtcg
gagggtgctgaggttaaacaaggcaatgaggagaatgggacagatgaaaatggtgaaggc
ttggcttcagcgtcctctcaatctgggtcagatgggcccaaatccaggcaccacctgctc
cgccacaaactcaccctagatgagggaacatcaagtgacaaggcggcagcagagggtgaa
gtagaaaagaaggagggcaagaaaaaggccagctgcatagacctgagcactgatagtgaa
agtgatggtgacaattatgagctggagctggaggagatggaaatgagcgaagagctgagt
cagtcagaggatgaggccggagaaaaaaagccaaacagattatccactaaagtgaaatcg
ccccgcagtaacgacaaaaaggaacaaatgctttgcattttgctgtctgactccagcact
gaaaagagcgatcaggaggatacagatgaggggactgtcgacagtaaaggcacccccaaa
ggacgcaagaagatccgcaaaatcctcgaaaatgagaatctgcgggcagagacccaggaa
gcgctgagagaggaggaggagaggtgcaaacggttggcagatagggagcaacagatggcg
gacacgagagagattattgttatagaggatgagctgtctcaagtgccgtgtccaatcacc
acaaagctggtcctggatcaggatgaggagactaagaagcctcttgttcaggtgcacagg
aacctggtgacaagactgaaacctcaccaggtggatggagttcagtttatttgggacagt
tgctgtgagtctgtgaagaaggccaactcttctcctggatcaggctgtatactggcacac
tgcatgggtctgggaaagactcttcaggtggtagcgttccttcacacagtgttgctgtca
aagaacctgaacttcagaacggcactgatcatgtgtcctcttaacactgtcctcaactgg
gtcagcgagttcaagaaatggcaaggcaacatgggagaggatatagtcaaagttacagaa
ctggtcacaaaaaagactctcccagaccggatcggtgctctgaagaggtggcagagtgct
ggaggtgttatgataatgggatacgaaatgtaccgcaacatgtcacttagccagaaaatg
ggggatgagaagtggaagaaagagcttaaaagcttactggtggatccaggtccagacttt
gtggtttgtgatgaggggcacatcctgcgcaacgaagcatccaatatctccaaagcctca
aatgccatcaagaccagacgaagagtcgtgctaactggcacgccgctgcaaaacaacctg
gtcgagtaccactgcatggtcaatttcatcaagaagaatcttctgggctcgctgggcgaa
ttcagaaaccgatttatcaacccgatacagaacggccagtgtgccgactccacaccaaaa
gacgtgcgaatcatgaagaagcgtgcacatgtccttcatgccatgctggccagatgtgtg
cagaggagagattactcagagctaacccagtttctacctcccaaacttgagtatgtggtg
gcggtgagggtttccccgcttcagtataagctgtaccgctactaccttgagcacgtcact
ggtgttggtttcatggctaacacaccgaggatgaggacgggagcaaacttgttcaaggac
tttcaggttctcagcaggatttggactcatccctggtgccttcagctcagctacatcagc
aaaaacaaaaaaggaccctttgaaaagaagaatcaagttacagttgcagctctgttcaga
aataaggagcccgctgtgactgagaccagactgagcgagaacaaagacaaaggagagaac
gctgacagcactacagcactttctgctgacgtggtcaaagacgctccagcagtaggaggg
gagagagcaaccagagagattccaggtgagggctggttcaagaatctgctgtctgaaagt
gacgccaaaatcctggagcactctgggaagatggtgctcttatttgagatcctgagaatg
gccgaagacctgaaggacaaagtgctcgtgttcagtcagtccttgatctcgttaaaccta
attgaggatttcctcaaggcttctcaccatgcaagagattcatcatcattcaaagcgggc
agctggattaaaaacattgattactaccgtcttgatggttccaccagtgctatattaagg
aagaaatgggcagatcagttcaataatcctgccaatgtccgcggcagattgtttctcatc
tcaacaagagcgggctcgctcggcatcaacctggtccatgccaacagggtgatcatcttc
gacgcctcatggaatccctcatatgacatacagagcatatacagggtctaccgtttcggt
cagctcaaacaagtgtttgtgtatcgcttcctggctcagggaaccatggaggagaagatc
tatgatcgtcaggtgactaagcagtctttgtcgaaccgagtggtggatcagcaacagatc
gagaggcacttcaccctttctgaactgactgaactttacatatttgagccagacctgctg
gatgacccaaactcaaagaaaagcaagagaaccacctctgttttaccaaaggatagtgtc
ctggtgacgctgttacaaacctgtaaagaccacatagtgagctgccatgagcatgaatct
ctgctggaccataaagaagaggaggagctcagtgaggcagaacgcaaagctgcctgggca
gagtacgaggccgagtcaaacacagccagcgcctcggttagctcgagccagaacgccttg
ataggaaagactaatgaacagctactgaaactgctcaacaagactagaacagacgtatca
ggggcctttttggcgctgcagaagatcacgtctcacactatcgaacaatacatgcagctg
ctgcggcagcagtatcctgacctgccccatccagaggtcaggcagaaggccgagctttgg
aaacaaagtgacgagaaggagcaggaacgcagacgggccttttatcaagacgtcctcgcc
aaacaacaatcgctcacactccatatccaggccatgctgaacagtcgaaggactcaactg
atgcagacgacagcgaacactgtgaaccagcaagggcagacttga
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integrated database retrieval system
