Scomber scombrus (Atlantic mackerel): 133993701
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Entry
133993701 CDS
T10651
Name
(RefSeq) NLR family CARD domain-containing protein 3-like
KO
K22614
NLR family CARD domain-containing protein 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssco04054
]
133993701
Pattern recognition receptors [BR:
ssco04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
133993701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
WHD_NOD2
LRR_6
LRR_NLRC3
LRR_CARMIL
PRAME_C
LRR_4
HTH_NLRC5
LRR_TMOD-LMOD
LRR_MHP1-HER1-GIP3
WHD_NACHT_C
7TM_GPCR_Srsx
Glyco_hydro_67N
DFF-C
Motif
Other DBs
NCBI-GeneID:
133993701
NCBI-ProteinID:
XP_062288701
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All DBs
Position
14:complement(30091278..30104871)
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AA seq
984 aa
AA seq
DB search
MDQCEDREEGVPPSKSSLCGEHDSQTKAQRMQQQRADSPEPSCVSMKSDGSMGGLVMFKD
GQPADGSFISIRMQQQRADSPEPSCVSMKSDGSMGGLVMFKDGQPADGRVQQQSSEVPSD
QSAQQHQTQLDSIFMLLEENIVTFVKNELKRVQRGLSPDDPECLESQSEDEEVLDGEEEE
QRRSSRDAFLKITLHFLRRMKQEDLAERLQSRARAAKCRRKLKSNLEKKFQCLFEGIAKA
GNPTLLNQIYTPLYITEGGTAEVNDEHEIRQIETASRKPHRPETTIKQEDIFKASPGRDE
PIRTVMTKGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNVLKEKKYSLVELV
HHFFTETKEAGICRFEEFQVVFIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIR
GKLLPSARLWITTRPAAANQIPPECVDMVTEVRGFTDPQKEEYFRKRVRDEEQASTIISH
IKTSRSLHIMCHIPVFCWITATVLEDVLKSREGEELPKTLTEMYIHFLVLQSKLRNIKYD
GGAETDPLWSPESRKMIESLGKLAFEQLQKGNLIFYESDLTECGIDIRAASVYSGVFTQV
FKEERGLNQDKVFCFVHLSLQEFLAALHVHLTFIKSGVNLLAEEQKTSCWSKVFKTKPEP
TRFYQRSVDEALKSPNGHLDLFLRFLLGLSLQTNQSLLRGLLTQIGSSSQTNQETVEYIK
EKISENVSAERSINLFHCLNELNDRSLVEQIQQYLRSGSLSTDELSPAQWSALVFILLSS
DKDLDVFDLKKYSASEEALLRLLPVVKASKKALLSGCNLSERSCAGLSSVLSSQSSSLRD
LDLSNNNLQDSGVKQLSAGLESPHCTLETLSLSACKITEEGCASLASALSSNPSHLRELD
LRYNHPGDSGEKLLSAGLKDPHWRLDTLRMDHDGLQRLKPGLRKCECVFSLIHENFEKNW
MKYVKEVKKVQNDGKCVLSEMGVA
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtgtgaggacagagaggagggagtccctccctctaaaagctctctgtgtggg
gaacatgacagccagaccaaagctcagaggatgcagcagcagagagcagactctcctgaa
cccagctgtgtgtccatgaagagtgacgggtctatgggtggtcttgttatgtttaaagat
ggacaacctgctgatggaagttttattagtatcaggatgcagcagcagagagcagactct
cctgaacccagctgtgtgtccatgaagagtgacgggtctatgggtggtcttgttatgttt
aaagatggacaacctgctgatggaagagttcagcagcagagctcagaggttcccagtgat
cagtctgcacagcagcatcaaacacagctggactccatatttatgctgctggaggagaac
atcgtcacttttgtgaagaacgagctgaagagagtccagaggggtctgagtccagatgac
ccagaatgcctagagagtcagagtgaggatgaggaggtgttggacggtgaggaggaagag
cagaggaggagcagcagagatgcatttctgaagatcactctgcacttcctgaggagaatg
aagcaggaggatctggctgagcgtctgcagagcagagctcgtgctgcaaagtgtcgacgt
aaactcaagtctaacctggagaagaagttccagtgtctgtttgaggggatcgctaaagca
ggaaacccaacccttctgaatcagatctacacaccgctctacatcacagagggagggact
gcagaggtcaatgatgaacatgagatcagacagattgaaacagcatccaggaaaccacac
agaccagaaacaacaatcaaacaagaagacatctttaaagcctcacctggtagagatgaa
ccaatcagaacagtgatgacaaagggagtggctggcattgggaaaacagtcttaacacag
aagttcactctggactgggctgaagacaaagccaaccaggacatacacttcacatttcca
ttcactttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgtt
catcacttctttactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggtt
gtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccacaacactgag
atcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagg
gggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcag
atccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgacccacagaag
gaggagtacttcaggaagagagtcagagatgaggagcaggccagcaccatcatctcccac
atcaagacgtcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcact
gctacagttctggaggatgtgctgaaaagcagagagggagaagagctgcccaagaccctg
actgagatgtacatccacttcctggtgcttcagtccaaactgaggaacatcaagtatgat
ggaggagctgagacagatccactctggagtccagagagcaggaagatgattgaatctctg
ggaaaattggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctg
acagagtgtggcatcgatatcagagcagcctcagtgtactcaggagtgttcacacaggtc
tttaaagaggagagagggctgaaccaggacaaggtgttctgcttcgtccatctgagcctt
caggagtttctggctgctcttcatgtccatctgacattcatcaagtctggagtcaatctg
ctggcagaagaacaaaaaacatcatgctggtctaaagtctttaaaaccaaacctgaacca
acacgtttctaccagagatctgtggacgaggctttaaagagtccaaatggacacctggac
ttgttcctccgcttcctcctgggtctttcactgcagaccaatcaaagtctcctacgaggt
ctgctgacacagataggaagtagctcacagaccaatcaggaaacagtcgagtacatcaag
gagaagatcagtgagaatgtgtctgcagagagaagcatcaatctgttccactgtctgaat
gaactgaatgatcgttctctagtggagcagatccaacagtacctgagatcaggaagtctc
tccacagatgaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatca
gataaagatctggacgtgtttgacctgaagaaatactctgcttcagaggaggctcttctg
aggctgctgccagtggtcaaagcctccaaaaaagctctgctgagtggctgtaacctctca
gagagaagctgtgcaggtctgtcctcagttctcagctcccagtcctctagtctgagagat
ctggacctgagtaacaacaacctgcaggattcaggagtgaagcagctttctgctggactg
gagagtccacactgtacactggaaactctcagtctgtcagcatgtaagatcacagaggaa
ggctgtgcttctctggcctcagctctgagctccaacccctcccatctgagagagctggac
ctgagatacaatcatccaggagactcaggagagaagcttctgtctgctggactgaaggat
ccacactggagactggacactctcaggatggaccatgatggactgcagagactgaaacct
ggtctgaggaagtgtgagtgtgttttcagtttgattcatgagaactttgagaaaaactgg
atgaaatatgtaaaagaagtgaaaaaagttcaaaatgatggaaaatgtgttttgtcagaa
atgggcgtggcctaa
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