Scomber scombrus (Atlantic mackerel): 133993842
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Entry
133993842 CDS
T10651
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Membrane trafficking [BR:
ssco04131
]
Endosome - Lysosome transport
Others
Others
133993842 (lrba)
Endosome - Golgi transport
133993842 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
133993842 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133993842
NCBI-ProteinID:
XP_062288928
LinkDB
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Position
2:complement(24547468..24732444)
Genome browser
AA seq
2947 aa
AA seq
DB search
MASEEAAGDGKDGRSGAMALNPGVPIRGIRMKFGVLAGLVEVGEVSNRDIVETVFNLLVG
GQFDLEMNFIIQEPESIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTDVGLIQ
QVVQRISTTDSMIADLLVDMLGVLASYSITVKELKLFFSKLQGEKGQWPRHAVKLLSVLK
YMAHRNGPDSFFSFPGKNAAAIALPPIAKWPYQNGFTFHTWLRMDPLNNINVDKDKPYLY
CFRTSKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTLVHVYNRWKNSE
ISCYVNGELASFGDIAWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFGEALSAAQ
ILAIYQLGPGYQGTFKHKAESDLLFAEHHKTLLYDGKLSASIAFTYNPRATDAQLCLESS
PKDNASIFVHSPHALMLQDVKAVVTHSVQSGIHSIGGVQVLFPLFAQLDYCQPSSHELDT
SVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYSLEKSSKVHVTRPVLDIVLAFSRYL
SNLQNGILLLKQLCDHILFNPAIWIHAPPKVQLILYTYLATEFISTVTIYNAIRRVGTVL
QVMHTLKYYYWVINPQDRSGVIPKGLDGRRPNQKEILSLRAFLLLFVKQLIMKDHGVKED
ELQSILNYLLTMHEDDNLMDVLQLLVALMSEHPGSMVQAFDQRNGIRVIYKLLASKSEGI
RVQALKVLGYFLRHLPPKRKSEVMLSHGLFSLLTERLMLHSSQFTMTTYNVLFEILTEQI
CTQVIHKQHPDPDSTVKILNPQILKVIAALLKHSPPSPESMEVRRVFLSDMIKLFNNSRE
NRRSLLQCSVWQEWMLSLCYINPRNSEEQKITEMVYAIFRILLYHAIKYEWGGWRVWVDT
LSITHSKVTFEQHKENLSHMFRQYQRQESVGSLRTIRTVSCASQSSETTECVNGPSTEEA
APSTVIELTVDEQPLKSPDSASSSTITSSPLEAADERGQTSITVSNILARAEEDDQKLVQ
ESSTDGTEATGMQETSKDGPSDETNKQEPTTENNDNLQTSVSDQPETKAAEVVGDSAKTS
ASDDMQTPATDDAKSVSEHNKGESSNSRTDDSLKEADTELPVISDQESKNDQMSTETTDC
LENSVLGGASFVNEDLVGVSSVSHQIHPSDADDSQEESSYASATAGDEVEVVEKEGDKQD
QDDEGKKNEGQELKEEEEEKDEKQEVTIEEKAEESEEHVSGLESQKVETTPTAAPEENVI
EPPKEIVKDDQSSSITESASADQQPADTTPPSTDQEVAAASDSAAASPSQPSETTCTTGE
ETLTSAPDSSAATSSSDTQKSADSKTKEIKIARLDVSNVALDTERLELKETFSTETSQGQ
PAATAPAAAPPAAAGGSAGQPRESGTSAPRSTMFRIPEFRWSHMHQRLLTDLLFAIETDV
QMWRSHSTKTILDFVNSSENVVFVHNSIHLISQVVDNLIMACGGILPLLSAATSSSHELE
NIEPSQGLAVEASVTFLQRLINLVDVLIFASSLNFTEIEAEKNMSSGGILRQCLRLVCAM
AVRNCLECQQAQSKHSKECSAHSYTTMPSAVLGTAKSAAAQSPVDAVTGGMSPVRDLDRL
LQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPHNDKKHPQRSQS
SRSTDSGAISGGLEVENGVSLRRYDSGIGDDHTSTAASDADLSSSGVAHGPDAISEALST
LSSEVRPAQPADSKGKNVKDILRSLVSTPADDIMVDPSLLPPAFLGSVGDAARDSSMQFR
SFDRSVVVAPKKAGMTPSPGTSTPVPAATASSVSGGTPIDSVAVVSSGDASQSTSADCAA
AAGGQVPASASLPSVPPLSPVTQHTAPNMSISERLEHALEKAAPLLREIFVDFAPFLSRT
LLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLS
HTMKDHLVRVANEAEFILSRQRAEDIHKHAEFESNSAQYAAEKRDEEKMCDHLIRAAKYR
DHVTATQLIQKIVNILTDKHGAWGNSSMSRPREFWRLDYWEDDLRRRRRFIRNPFGSTHS
EATLKAAAEHASEEDILKGKQSIRSQALGNQNSESETLLDGDDDTLSSLDEKDLENLTGP
VNLSTSAQLVAPAVVVKGTLSITASELYFEVDEDDQGFKAIDPKILAYTEGLHGKWLFTE
IRAVFSRRYLLQNTALEIFMANRTAVMLNFPDAAAVKKVVHSLPRVGVGTNFGLPQTRRI
SLATPKQLFKASNMTQRWQRREISNFEYLIFLNTISGRTFNDLNQYPVFPWVITNYDSEE
LDLTLPSNFRDLSKPIGALNPKRAAFFSDRYESWEDDQVPKFHYGTHYSTSSFTMMWLLR
IEPFTTFFLNFQGGKFDHADRTFSSVSRAWRNCQRDTSDVKELIPEFYYLPEMFVNANTY
NLGVMEDSTVVSDVELPPWAKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEA
TRALNVFYYLTYEGAVNLSSINDPMLREAVESQIRSFGQTPCQLLIEPHPPRSSAMQVSP
LMFTEQMQQDVIMVLKFPSNSPVTHVAANTQPGLTSPAIITVTANRLFAVNKWHGLTGHQ
SSTVQDQQYQLPVEIDPLIASNVGSHRRQISDLLDQSIQISSQYFVITADNRFTLLCGFW
DKSFRVYSTDTGKLTQIVFGHRDVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHS
SIGESPGTEFTTPRAILTGHDCEVTCASVCAELGLVISGCKEGPCLIHSMNGDLLRTLEG
PERCLRPRLIQSSTEGHCMIYYDKGQFCLFSVNGKLLGHMEVDDSIKAMLLSRDGQYLLT
GGDGGVVSVWQVHNLKQLFTYPGCDAGIRSMAMSHDQRCIITGMASGSIVLFYNDFNRWH
HEYQTRY
NT seq
8844 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggaggcagcaggtgatggaaaggacggcagatcaggcgccatggcgctc
aaccccggagtgcctatcagggggataaggatgaaatttggcgtgcttgctggcctggtg
gaagttggggaagtttccaaccgagacattgtggagacggtgttcaacctgctggttggt
ggccagtttgacctggagatgaacttcatcatccaggaaccggagagcatcgtgtgcatg
gtggagctgttggacaagtgcgagcccacttgtcaggccgaggtctggagcatcttcaca
gcgatcctcaagaagagtgtccgcaacctgcaggcgtgcactgatgtgggcctcatccag
caggtggtccagcgtatatccaccaccgacagcatgatcgcagacctcctggtggacatg
ttgggcgtgctcgccagctacagcatcacagtcaaagagctgaagcttttcttcagcaag
ctgcaaggggaaaaaggccagtggcctcgtcatgcagtgaagcttttgtccgtgctgaag
tacatggcccacaggaatggcccagactccttcttcagctttccagggaaaaatgcagct
gctatagctctgcctcccatagcgaaatggccgtaccagaatgggtttacattccacaca
tggctccgcatggatcctctcaacaacataaatgtagacaaagacaagccttacctgtac
tgcttccgcaccagtaaaggcctaggttactcagcacactttgtgggcggctgtttgata
gtgacctcgttaaaatccaaggggaaaggattccagcactgtgtgaagtacgacttcaaa
ccacagaagtggtacatggtgactcttgttcacgtctacaaccgttggaaaaacagtgaa
attagctgctatgtgaacggagaactagcttctttcggagacattgcctggtttgtcaac
accagcgacacatttgacaagtgtttcctgggatcatcggagacggcagatgccaaccgt
gtgttctgcggacagatgggggcagtttatctgtttggagaagctctcagtgctgcgcag
atcctggcaatctatcagctgggtccaggttatcagggcacattcaagcataaggccgag
agtgacttgctgtttgcggagcatcataagaccttactgtacgatggaaagctgtccgct
agtatcgccttcacttataaccctcgcgccacagacgcccagctctgccttgagtcctcc
cccaaggacaacgcctccattttcgtccactcaccccatgcactcatgctgcaggatgtg
aaagcggtggtgactcactcagtccagagtggcatacactctattggtggtgtgcaggtc
cttttccctctatttgcacagctggattattgccagccctccagccacgagctggacacc
tctgtctgctgcactttgctatcctttgtgatggagctcttgaagaactccgtggctatg
caagagcaagtcctggcctgcaaaggctttctcgtcatcggctacagtttggagaagtct
tccaaggtgcatgtgacgcggcctgtcctggacattgtgctagccttttccagatacctt
agcaacttgcagaatggcatcttgctgctcaagcagctgtgtgaccacattctgttcaac
cctgccatctggatccatgcccctcccaaggtgcaactgatactgtacacttacctggcg
acagagttcatcagcacagtgactatctataacgccattcgcagggtgggcactgtgctg
caggtcatgcatacactgaaatactactactgggttatcaacccccaggaccgcagcgga
gtcatacccaaaggcctagatggtcgaaggccaaaccagaaggaaatcctttctttgcga
gcttttctgcttttgtttgtcaagcagctcataatgaaggatcatggagtgaaggaagac
gagctgcagagtatcctcaactacctccttaccatgcacgaggatgacaatctcatggat
gtgctgcagttgttggtggctttgatgtctgaacatcctgggtctatggtccaggccttt
gaccagcgcaatgggattcgtgtgatttacaagcttttggcatcaaaaagtgaaggaata
agagtgcaggcactcaaagtattgggctactttctgagacacttaccaccaaagagaaag
tcggaggttatgctgagtcacggcctcttctcgctgctcactgaacgcctgatgctccac
tccagccagttcaccatgacaacgtacaatgtgctttttgagattcttacagaacagatc
tgtactcaagtgatccataaacagcatccggaccccgactctactgtgaagattctcaac
ccacagattctgaaggtaatagctgctctgctgaagcactctcccccatcccccgagagc
atggaggtgcgcagggtttttctgtcagacatgatcaaactgttcaataacagcagagag
aaccgcaggagcctgctgcagtgctcggtgtggcaggagtggatgctctctctgtgttac
atcaacccgcgaaacagcgaggagcagaaaatcacagagatggtgtacgccatcttccgc
atcttgctctaccacgctatcaaatatgagtggggtggctggcgcgtctgggtggacacc
ctgtccatcacccactccaaggtaacctttgagcagcacaaagagaatctgtcccacatg
ttccgtcagtaccagcgtcaggagtctgtgggttctttacgcactatccgaactgtttct
tgtgccagccaaagctctgagaccacggaatgtgttaatggaccatctacagaggaggct
gccccttccactgtcatcgagcttacagtggacgaacagccactgaaatcccctgactca
gcatcaagctccaccatcacctctagcccactggaggctgctgatgaacggggacagaca
tccatcactgtgtccaacatcctggctagggctgaagaagacgaccaaaaactggttcag
gagtcttctacagatgggactgaagctactgggatgcaagaaaccagtaaagatggacct
agcgatgaaaccaacaaacaggaaccaacgactgagaacaacgataatctccaaacatca
gttagcgaccagcctgaaacgaaggcagctgaagtagtcggagactctgctaaaacatct
gcaagtgatgatatgcaaacacctgcaacagatgacgcaaaatctgtgagtgaacataac
aaaggtgaatcatcaaactccaggacagacgactcgttaaaggaagcagacacagaactg
ccagtgatttcagatcaagaaagtaagaatgatcaaatgtccaccgagactacagactgt
ctggagaacagtgtgctgggtggagcatctttcgtcaacgaggacctggttggcgtttcg
tctgttagtcaccagatccacccgagtgacgccgatgatagccaagaagagtcctcttat
gcgtctgctactgccggagatgaagtggaggtagtagaaaaggagggagataaacaagat
caagatgatgaaggcaagaaaaatgaaggacaggaattgaaagaagaagaagaagaaaaa
gatgaaaaacaagaagttacaatagaagaaaaagctgaagagagtgaagaacatgtgtct
ggtttagagagtcagaaggtggagacaactccaactgcagcacctgaagaaaacgtgata
gaaccaccaaaagaaatagttaaagatgatcagtcttcctccatcactgaaagcgcttct
gcagaccagcagcctgcagatactacaccgccctctacagaccaggaggttgcagcagca
tcagactctgccgccgcctcgcctagccaaccttcggaaaccacttgcactactggggag
gaaaccctgaccagtgccccagacagtagcgctgccacctccagctctgacacccagaag
agtgcagacagcaagaccaaagagatcaaaattgccagacttgacgtgtctaatgtggcc
ttagacacagaaagacttgaattgaaggagaccttttcaacagaaacaagccaaggccag
ccagctgcaacggcaccagcagcagcaccaccagcagcagcgggagggtctgcaggccag
ccgagggagagcggcacctcagcccctcgttccaccatgtttcgtatcccggagttccgc
tggtcccacatgcaccagcgcctcctcactgacctgctcttcgctattgagacagatgtc
cagatgtggaggagtcactccacaaagacaattttggactttgtgaacagcagcgagaac
gtcgtatttgtccacaacagtatacacctcatctcccaggtggtggacaacctcatcatg
gcttgtggaggcattttacctctgctttctgctgccacttcctcctctcatgaactagaa
aacattgaaccatcccaaggcttggcagtggaggcttcagttaccttcttacagcggctc
atcaacctcgtggatgttctcatctttgccagctccctcaacttcacagagatagaagct
gagaaaaacatgtcgtcaggaggcatcctccgacagtgccttcgtcttgtgtgtgctatg
gcagtgaggaactgtctagagtgtcagcaagcccagtctaagcacagcaaagaatgctca
gcacacagctacacaaccatgcccagtgctgtgcttggaacagccaagtctgcagctgct
cagagtcctgttgacgcagtgacaggtggaatgtctccagtcagagatctggaccgtttg
ctccaggacatggacattaaccgcctcagggctgtcgtcttcagagatattgaggacagt
aagcaggcccagtttctggctcttgctgtagtctatttcatctcagtcctcatggtgtcc
aagtaccgcgacatcctggagccccacaatgacaagaaacaccctcaacgatcccagtct
tccaggagcacagatagtggtgccatttctggtgggctagaagtggagaatggtgtctct
ctccggaggtatgattctggcatcggtgatgaccacacctcaaccgcagccagcgatgct
gatctgtcatcctctggcgtggctcacggcccagacgccatctcagaggccttgtctacg
ctgtcgtctgaggtcagacctgctcagcctgctgactcaaagggcaaaaatgtgaaggac
attctacgcagcctagtgagcactccagctgatgacatcatggtggatccaagtcttctg
cccccggcttttctaggaagtgtgggggatgcagcccgagactcatcaatgcagttccgc
tcatttgatagaagtgtcgtcgttgcacctaagaaagcaggcatgacgccgtctccaggc
acttccactcctgtcccggcagccactgcttcctcggtgtctggtgggacacccattgac
agtgttgctgtggtgtcttctggtgacgcctcccagagcacctctgcagactgtgctgca
gctgcaggcggccaggttccagccagcgctagcttgccatctgtccccccactctcccct
gtgacccagcacacagcccccaatatgagtatctcagagcgtctggagcatgctctggag
aaggcagctcctctactgagagagatcttcgtggactttgcccctttcctctctcgaacc
ctgctgggcagtcatggacaagagctcctcatcgagggcactagcctggtgtgtatgaag
tccagcagctcagtggtggagctcgtcatgcttctgtgttcacaggaatggcagaactcc
atccagaagaatgcaggtctcgctttcatcgagttggtcaatgagggcaggctgctgagt
cacaccatgaaggaccacctggttcgtgtggctaatgaagcagaattcatcctcagccga
cagagggctgaagacatccataaacatgcagagtttgagtctaactctgctcagtacgcc
gcagagaagcgagatgaggagaaaatgtgtgaccacctgatccgtgcagccaagtaccgc
gaccatgtgacagccacacagctcatccagaagatagtcaacattctgactgacaaacat
ggagcctggggaaactcttctatgagccgaccgagggagttctggcgcctggactactgg
gaggacgatttaaggcggcgacgtcgcttcatcaggaaccccttcggatccactcactca
gaggctacgctcaaagctgcggccgaacacgcgtccgaagaggatattctcaaaggcaaa
cagtccatcaggagtcaggctctgggaaatcaaaactctgaaagtgagacactacttgac
ggagacgacgatacactatcatctttagatgagaaggacctggagaatttaacaggcccg
gtaaacttgagcaccagtgcgcagctggtggctccggccgtggtggtgaaaggcacgctg
tccatcaccgcctccgagctctacttcgaggtggatgaggacgaccaaggcttcaaggcc
atcgatccaaagattttagcctacacagaaggtcttcatgggaaatggctgttcacggaa
atccgcgctgtcttttccaggcgctacttactgcaaaatactgctctggaaatcttcatg
gcaaacagaacggccgtcatgttaaacttcccagatgcagccgctgtcaagaaggtggtc
cacagtcttccacgtgttggggtgggcaccaactttggccttccacagaccagacgtata
tctctggccacaccaaagcagctattcaaggcatccaacatgacccagcgctggcaacgt
cgtgagatttccaactttgagtacctcatctttctcaacaccatctctggtcgaaccttt
aatgacctaaaccagtacccggtcttcccctgggttatcaccaactacgactcagaggag
cttgacctcactctgcccagcaatttcagagatctgtccaagcccatcggtgctctgaac
cccaagagggcagcgttcttttcagaccgatatgagtcctgggaggatgatcaggtgcca
aagttccactacggcacccactattccacctccagcttcacaatgatgtggctacttcgt
attgagcccttcacaacgttcttccttaacttccaaggtgggaagtttgaccatgctgac
cgtaccttctcttcagtgtcccgggcctggagaaactgccagagagacacatctgatgtt
aaggaactgattccagagttctactacctcccagagatgtttgtcaatgccaacacatac
aacctgggagtgatggaggatagcaccgtcgtctctgatgtggagctgccaccctgggct
aagacaccagaggagtttgtgcgcatcaatcgcctggctttggagagtgagtttgtgtcc
tgccagctccatcagtggattgacctgatctttggctacaagcagcagggacctgaagcc
accagagccctcaatgttttctattatctcacctatgaaggggcagtcaacctcagctcc
atcaatgaccccatgctcagagaggctgtggagtctcaaattaggagttttggacagacg
ccctgccagttactcatcgagccacacccaccccgaagttcagccatgcaagtgagcccg
ctgatgtttacggaacagatgcagcaggatgttatcatggtgttaaagttcccatccaac
tctcctgtgacgcatgtagcggccaacacccagccgggtttgacatcacccgccataatc
acagtcaccgccaaccgcctcttcgctgtcaacaagtggcacggcttgacaggtcatcag
agctcaacagtgcaggaccagcagtaccaacttcctgtggaaattgaccctttgatagcc
agtaacgtgggcagccatcgtcgtcaaatctcagacctgctggaccagagcattcagatc
agctcgcagtatttcgtcatcacagccgacaaccgcttcacccttctgtgtggcttctgg
gacaagagcttccgagtctactccactgacacaggcaaactgactcagatagtctttggg
catcgtgacgtggtgacgtgtctggctcgctctgagtcttacatcggaggagactgctac
gtcctgtcaggctccagagatgccaccctgctgctctggtactggaatggaaagcacagc
agcattggagagagccccggcacagagtttaccacaccgcgagccattttgactggccat
gactgtgaggtgacgtgtgcaagtgtgtgtgccgagttgggccttgtcatcagtggctgc
aaagagggtccttgtctgatccactctatgaatggggacctgctgcggaccttggagggc
ccagagcgctgccttcgaccccgcctcatccagtcctccactgagggccactgcatgatt
tactacgacaagggacaattttgtctcttcagtgtcaacggaaaactgctgggacacatg
gaggtggacgacagcatcaaggccatgcttctcagtcgtgatggccagtatctgctgaca
ggtggtgatggaggtgtagtatctgtctggcaggtccacaacctcaaacagctgttcact
taccctggctgcgacgcaggaatccgctccatggccatgtcacatgaccaaaggtgcatt
ataactggcatggcctctggaagtatcgtcctcttctacaacgacttcaacagatggcac
cacgagtaccagacacgatactga
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integrated database retrieval system
