Scomber scombrus (Atlantic mackerel): 133993851
Help
Entry
133993851 CDS
T10651
Name
(RefSeq) protocadherin-10-like
KO
K16499
protocadherin delta 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133993851
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Protocadherins
133993851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
133993851
NCBI-ProteinID:
XP_062288934
LinkDB
All DBs
Position
14:complement(8549430..8553672)
Genome browser
AA seq
991 aa
AA seq
DB search
MDTQGAKKRLCGRWHAVCRFALFTCFLDTVWGQIRYSIPEELEHGAFVGNIAEDLGLDLD
KLSARRFRIVSGAKKQYVEVNLENGVLFVNERIDREELCEQSLSCSFHLQVVIENPLELY
RVEMDILDVNDNSPSFPWTEFNLDISESALPGSRFPLESAQDFDVGSNSLRTYLLSVNEH
FLLDIQTRSDGSKFAELVLQSPLDREQQSAHQMVLTAVDGGAPERSGTAQIDITVLDAND
NAPVFDQSFYRVRLAENAPKGTVVIKLNASDLDEGPNADITYSFSGHAPIKVRQLFSVDS
RTGEIKVKGVIDYEKARMHEIYVQAKDKGPSAVAVHCKVLVNILDKNDNLPEVILTSVST
PVQEDAPPGTVIAVISVMDKDSGENGNVDCEIPHHVPFQLHSSFKNYYTLVTCDFLDREA
VAEYNITLTARDMGSPPLFTRKTILVQVSDVNDNAPHFKQPSYTVYLTENNAPGASICSV
TALDPDYGQNAYLSYSILDGDIQGMSVSTYVSINSDSGNLYALRSFDHEQLKNFQIIVKA
QDAGFPPLSSNVTVTIFILDQNDNEPVIVSPVPQNGTVPTEAVPRSVDAGYLITKINAVD
ADAGQNSRLFYQMLQATDPSLFSIALYTGEIRTIRQLVEKDPIRHRLVILVKDNGQPPLS
ATVSIILSVVDSLPDTPPDLGDLSLSPHHNSNFTLYLIVSLGAISFTFLVAIIVLVAVRR
LKGRPSNSESNFLSISECCCCCSRSEKSTATEVFKKSNLNVRMSGGASGCAEANSGTALP
QVYCYKMCLTPELSKSDFMFLKPCSPVMSVQQNNAKSTDYLTSGWSALDRNELTNNRAAT
PNELKYSNKDLTWTKNQRNSAYKRYSSANMEGTLSRQQKYDADGFSCSVAPQYWTWGNHM
KDCKMTLQEGVVPNYSWTPKYTQPQCDPPDYQHNVYIPGTTSGYSTLKLTPRGELDVYNT
FSTFGKKKKFISSYEQSFDNDDGLISNDIYK
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaaggggcgaagaaaagactctgtgggagatggcatgcagtgtgccgtttt
gcgctgttcacttgtttcctggatacagtctggggacagattcgttactcaatcccagag
gagctggagcatggagcttttgttggcaatattgcagaggacctgggcttggatttggac
aagctctctgcgcgcagattccgtatagtctcaggtgccaagaagcaatatgtggaggta
aatttagaaaatggagttttgtttgtcaacgaaagaattgaccgtgaagaactatgcgag
cagagtttgtcttgttcttttcacttgcaagtggtcatagaaaaccctctggagctgtac
agggtagagatggacattttggacgtgaatgataactctcctagtttcccgtggacagaa
tttaatctggacatatcagagtctgctttgccaggatctcgtttcccacttgagagcgca
caggattttgacgtggggtccaattcgctccgcacctatttgctgagcgtaaatgagcat
ttccttttagatatacagacgcgcagtgatggcagtaaatttgcagagctagtcctacaa
agcccactggacagagagcagcaaagtgcgcatcaaatggtcctaacagctgttgatgga
ggtgcgccggagagatctggcactgcgcaaattgatattaccgttttggatgcaaatgat
aacgcgcctgtgtttgatcagtcgttttacagagtgaggcttgctgaaaacgcaccaaaa
ggcacagttgtcataaaactcaatgcgtccgatttagatgagggacccaatgctgatatc
acttattcattcagtggccacgctcccatcaaagtgcgccagcttttcagtgtagactcg
cgcacgggggaaatcaaagtcaaaggagtcatagattatgaaaaggccaggatgcatgaa
atttatgtccaggctaaagataaaggtccatccgcagtagcagttcactgcaaagtactg
gtgaacattttggataaaaacgacaaccttccagaggtgattttgacatcagtgtccaca
cctgtgcaggaggacgcacctccgggaacggtgatagccgtcatcagcgtaatggacaaa
gactcaggggagaacgggaacgtggactgtgagattccccatcacgtcccatttcaactc
cactcatcctttaagaactactatacattagtaacttgtgattttttggatagggaggca
gtggcagagtacaacatcaccctcaccgcccgagatatgggctccccacctttattcaca
aggaaaactattttggttcaagtgtctgatgtgaacgataacgcgcctcacttcaaacag
ccctcctatactgtatatttaaccgagaataacgcgccaggggcatccatttgctcggtg
accgcactggatccagattacggtcaaaacgcatacctctcctattctatattggatggt
gacatacaaggaatgtcagtgtccacatatgtgtccatcaactcagacagcggcaacctt
tacgcgctgcgatcctttgaccacgaacagcttaaaaactttcagatcatagttaaagct
caagacgccggttttccgcctctgagcagcaacgttacagtgaccatctttattttggat
caaaacgacaatgaacccgttattgtgtcaccagttccacaaaatggaacggtacctacc
gaagcagtgcccagatcagttgacgctggttatcttattacaaaaattaacgcggtggat
gcagacgcaggtcaaaactcgcgtcttttttatcaaatgctccaagcaacagacccgagc
ttgtttagcattgctctgtacacgggagaaatcaggacaatacgccagttagtggaaaaa
gaccccataaggcacagactggtcattctggtgaaggacaatggtcagccacccctttcg
gccacagtttccatcatcctgtcagtggttgacagcctgccagatacaccgcccgatttg
ggtgacctgtcactaagcccacatcacaactccaacttcaccctgtacttaatcgtgtct
ctgggcgcaatctccttcacatttctggtggctataattgtcctggttgcagtgaggaga
ttgaagggcagaccgtccaacagcgagtccaacttcctctccattagcgagtgttgctgc
tgctgctcacgctcagaaaaatctaccgccacagaggttttcaaaaagtccaacttaaat
gttcggatgtccggaggcgcgtccggctgcgcagaggcaaacagcggcaccgcacttcct
caggtctattgctataaaatgtgtctgacaccggaattgtctaaaagtgacttcatgttc
ctcaagccttgcagtccggtaatgtcagtccaacagaataatgccaaaagcacagactac
ctgacatctggctggagcgcactggaccgtaatgagctgaccaacaacagagccgcaact
ccaaacgagctgaagtattccaacaaggacctcacctggacgaagaaccaacgcaactca
gcatacaaaaggtatagttcagcaaatatggagggtacactttcacgtcaacagaaatat
gatgctgatgggttttcctgctcagtggcaccacagtactggacctggggaaaccatatg
aaagactgcaagatgactcttcaagagggagtagtacctaactactcatggactccaaag
tacactcagcctcaatgtgatccaccagactaccagcacaatgtatacattcctggcacc
acatctggctacagcactctgaagctcacacccagaggtgaactggatgtgtataacacc
ttttctacttttgggaagaaaaagaaattcatctcaagctacgaacagtcttttgacaat
gacgatggtctcataagcaatgatatctataaatga
DBGET
integrated database retrieval system
