Scomber scombrus (Atlantic mackerel): 133993953
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Entry
133993953 CDS
T10651
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03030
DNA replication
ssco03420
Nucleotide excision repair
ssco03430
Mismatch repair
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
Brite
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133993953
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133993953
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133993953
MMR (mismatch excision repair)
133993953
DSBR (double strand breaks repair)
HR (homologous recombination)
133993953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133993953
NCBI-ProteinID:
XP_062289081
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Position
14:complement(26348463..26389396)
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AA seq
689 aa
AA seq
DB search
MSVRLTQGAVEALYKGEEVHNPVLQLLKIGHINSASGPPRFRLMMSDGLNSLSSFLLATQ
LNHLNEDNLLAPNCVCMLKKTVKNTLSDGRCVVIVMDIEILKSAEETGGKIGNPTPYNTD
GKTSSPAKSASSTSVPASPPSAAVPGPSHNNNSITDSPPRGRGRGFVGKSPVRTSPWNAS
PMKTSPWKDSPMKDSPTKTSPWKDSPMKTSPAKTPPWKASPMKTTPTKSPPWKASPSKTT
PTKSSPWKASSSSPDSSPKMIPIGSLNPYQSKWTIRARVTNKSNTRTWSNSKGEGKLFSF
DVLDESGEIKITAFNSEVDKFFSLVEQGKVYYISKASLKVANKQYTTLKNDYEMTLHAHS
SIVPCDDSQDIPTMNCDFVPIAEMENKDKDAIIDVIGVCKSADDVSRITTKASREVSKRA
LHLIDTTGKVVTVTLWGEEAEKFDGSGKPVVAIKGARLSDFGGRSVSALFSSTVMVNPDM
PEAFRLRAWYDKEGYAVDSQSLTEARSVGSGGKMNWKTLSDIKNQQMGHRDKADYFSCMA
TVVYVRKENCLYQACPSAECNKKVIDQQNGKYRCEKCNREFPNFKYRLLLSANIADFGDN
QWVTCFQETAEVLLGHSAETLGYLRDTDEAAFDEVFQKVNYTTHIFKNRVKLETYNDETR
VKVTVMEVQPVDHREYSRRLLSNIHKLAS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtacgactcacacagggggcagtggaagccctgtacaaaggtgaagaggtgcac
aatcctgttctgcagcttctgaaaatcggtcatataaacagtgcctcgggtccaccaagg
ttccgtcttatgatgagtgatggtctgaactctctgtcttccttcctgttggccacccag
ttaaaccatctgaacgaagacaacctcttggcaccgaactgtgtgtgtatgttgaagaag
accgtcaaaaacacattgtcagatggcaggtgcgtggtgattgtgatggacatagagata
ttgaagtcggccgaggaaaccggagggaagattggaaatcccaccccatataatacagat
ggtaagacttcatctccagcgaagtcagcctcgagcacctctgtcccagcatcccctcca
tctgctgcggtccctggaccctcccataacaacaacagcatcaccgattctcctccccga
ggccgtggaagaggtttcgtgggaaagtcacctgtcaggacgtcaccgtggaacgcttca
cccatgaagacgtcaccgtggaaggattcacccatgaaggattcacccacaaagacatca
ccgtggaaggattcacccatgaagacatcacctgcaaagacgccaccgtggaaagcttca
cccatgaagacgacacctacgaagtcgccgccgtggaaagcttcaccctcgaagacgaca
cctacgaagtcgtcaccgtggaaggcttcgagctcttctccagattcttcacctaaaatg
attcctattgggagcctcaacccctaccaatccaagtggactatcagagcacgagtcacc
aacaagtccaatacgcgcacctggagtaactctaaaggagaggggaagcttttctctttt
gatgtattggatgaaagtggagaaatcaagatcacagccttcaacagcgaagtggacaag
tttttctctctagtggagcaaggcaaggtgtactacatctctaaggcgtcactgaaggtg
gccaacaaacagtacaccacactcaagaatgactacgagatgaccctccatgctcattcc
tccattgtgccatgtgatgacagtcaggacatccccacaatgaactgcgactttgtgccc
atcgcagagatggagaacaaggacaaggatgccatcattgatgtgattggagtgtgcaag
agtgcagacgatgtgtcccgcatcaccacaaaggccagcagagaagtctccaagagggcc
ctccacttaatagacaccactggaaaagtggtgacagtcacactgtggggagaagaggcg
gagaagtttgacggctctggaaaacctgtggtcgccattaaaggagctcgcttgtctgat
tttgggggcagatctgtctctgctttgttcagctcaacagtgatggtcaacccagacatg
ccggaggcctttagactgagggcctggtatgacaaagaaggctatgcggtggacagccaa
tccctgacagaggcacgatcagtgggcagcggaggaaagatgaactggaaaacactgagt
gacattaagaatcaacagatgggacacagagataaggcggactatttcagctgcatggcg
acagtggtgtacgttcgtaaagagaattgtctgtaccaggcctgtccatctgcagaatgc
aacaagaaggtcatagaccaacagaatggaaagtaccgctgtgagaagtgtaacagagag
ttccccaactttaagtacagactcctactttctgctaacatagctgacttcggggataac
cagtgggtgacatgtttccaggagacagctgaggtcttgttgggtcacagtgcagaaaca
ctggggtatctcagagacacggatgaggctgcattcgatgaagtcttccagaaagtcaac
tacacaactcacatttttaagaacagagtcaagctggagacgtataacgatgagacccga
gtaaaggtaaccgtaatggaagtccaaccagtcgaccacagggaatacagcaggagactc
ctcagtaacatccacaaattggccagctga
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