Scomber scombrus (Atlantic mackerel): 133994084
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Entry
133994084 CDS
T10651
Symbol
nup98
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133994084 (nup98)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133994084 (nup98)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133994084 (nup98)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133994084 (nup98)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133994084 (nup98)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
133994084
NCBI-ProteinID:
XP_062289255
LinkDB
All DBs
Position
14:complement(28939083..28973070)
Genome browser
AA seq
1840 aa
AA seq
DB search
MFNKSFATPFGGGTGGFGTASTFGQPQNAGFGTTGGFGTSAFGATTNTGGLFGATQTKPG
GLFGSSTFSQPAASSASTGFGFGAAGGTTTSLFGNTAAGTTGGLFSQQNNAFGATKPASF
GSVSSCPPGFGTSTSSGGLFGATNTASNPFGGTNSLFGGAGFSAAQQPGTTVKFNPPTGS
DTMVKAGVTTSINTKHQCITAMKEYENKSLEELRFEDYTAGRKGPTNPIAAQTGGLFGAT
TATSSAATGLFGAAAPNTSFSFGQNKSTFGAVSAVAPAAAGFNTNTGGLFGQQAPQQAAS
SLFKPFGQTTTAQSTGFSFGNTNTMGQANTSSMGLFGNTAASQTGSMFGAAQTSAATGFG
TATGLFGQTNAGFGNVGTQQSLFGNKTAGFGTTTTSAPSFGAGTGLFGNKPALALGTGTN
TSTFGFGANPAAGGLFGNKPATGGLGTGLGTSFGAAVGTGQTSLFGNNQNKLGTTLGTMG
TFGATGFNSGASTLGFGAPQQPVALTDPNAAAAQQAMLQQQLSVLAYSPYGDSPLFRNPL
SDPKKKEERLKPTNPTAQKALTTPTHYKLTPRPATRVRPKALSSSGASKSQLFDGLDDDE
PSLTNGAFIPRKSIKKLVLKNLNSSQYNSPISKETDDLASPSEYPQNGHSHMEDEDELRE
LPGPSSRADDDPEVTQFYVNPIAKPIPHGRLQSSLQDTISELNMHKPARNGLELSSDDVS
ASLGEDSLLESREEEQQESQSPHPAGIVLNRVGYYTIPSMDEIAEMVDENGDCLVENFSV
GRKGYGSIFFPGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPPEGDGLNRRAEVTLDGVW
PNDKTSCTQIRSPDRLTDMNYEGRLEKASRKQGARFLEYRTETGSWVFEVAHFSKYGLQD
SDEEDDVPPKADPKKLKTMMSLPPSQQQMAPQAQSTVVVDLPGSMAELDSDMADITQSFP
TESMLGGEEDSDLSVALETAAVAAAKLGGLISAENDVIATSSHIASSLGINPHTLQIMKA
SLFAEDEEDSDMFQDQGAMKISAEVSSPRLVLPGAQSRPSVGGLLQARFTSGLLSQLSDS
PRAPPLSSPAAVESSRSLHWAGPGSSSSSFMLPSRPAEPAVRTVGVRRLGGPVALKESVT
QGKGGLLMDAGLYVGRSFRVGWGPGWTLAHCGQRLSSTSKYIDQEMNRTDFSFLPKPAKN
KPLAESPYKVVLEQLEGLEPPGGKLSEEEDDEDESQVFLQRPLEICLKHSSVSTTDASAC
PLVQPQPGVAALHEYAEWILQLSDQQGGADPLLGYWAEVWTLCEALWGRLGPADQEPDVE
PSSEYQQQLERRRTFSAWLSRGATCRVEEEVALAGKGRHTDAIFSYLTGNRISEACRLAQ
REGDHRLSLLLSQAMGSQYSRDLLALQLADWNRMQSDSYLSEERLRIFTLLAGKPVWQSS
ESVVNVCSELDWKRCVAVHLWFMLPPTASVADALAKYETAFQGSCEGGKYACAPLPPYLE
EEQPEEEEEEEESKRQLYDLCFHLLKLYSDRHYNLQQLLDPLTVTWERLDYRLSWHLWGV
LQALHYSHLSSQRQGLLHASYAAQLESAGLWHLSVFILLHIPDHTQRERAVRELLTLHCP
LQETQESVRRQRFLTERLLIPERWIHEAKATRARRDGDRHQEALHLYRAGYWNQCHRLLI
QHLASDCIINDNHDYLLEFLEGLALPEHSSSIQDWDTAGGVYLDYIRVIKTLQDIQQMES
TGYQLEGLHTDVTSLCSRIELLPCSTARDRLAQSEMAKRVANILRVVLSLQQGDAASDSL
SIPLAQLAPHITRLPMPEDYTLEELRGLTQSYLRQLIVSQ
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttgcgactcccttcggtggagggacgggcgggttcggcaccgct
tccaccttcggacagcctcagaacgcgggttttgggacgacgggaggcttcgggacgtct
gcgtttggggcgaccacgaacaccggaggcctgtttggtgccacacagactaaacctggc
ggtttattcggctccagtaccttcagccagcccgctgcctcctccgccagcaccggcttc
ggcttcggagcggccggcggcacgacgacgagcctgtttggaaacacggcagcaggaaca
accggaggactcttctcccagcagaacaatgccttcggagccactaaacccgcctcgttt
ggaagcgtctcctcatgtcctccaggcttcgggaccagcaccagcagcggcggcttgttt
ggggcgaccaacaccgcctccaacccgttcggaggaaccaactctctgttcggaggcgcc
ggcttctccgccgctcagcagccgggaaccaccgtcaagttcaaccctccaacaggaagt
gacaccatggtgaaagccggcgtgaccacgagcatcaacaccaagcaccagtgcatcacg
gccatgaaggagtacgagaacaagtctctggaggagctgcggtttgaggattacacggcg
ggcaggaaaggtccgaccaatcccatcgcggctcagaccggcggcctgttcggcgctacc
acggcaacgtccagcgccgccaccggcctgttcggcgccgcggctccaaacacgtcgttc
tccttcggacagaacaagagcacgttcggagcagtctccgctgtagctccggctgctgca
ggcttcaacaccaacaccggcgggttgttcggtcagcaggctcctcaacaagcagcatcg
agcctcttcaaaccgttcggacagacgaccacagcgcagagcaccggattctccttcggt
aacacaaacaccatgggacaagctaacaccagcagcatgggcttattcggtaacacggca
gcgtctcagaccggcagtatgttcggtgcggctcagaccagcgccgccaccggtttcggc
accgctaccggactgttcggacaaaccaacgccgggttcgggaacgtcggcacgcagcaa
agcctgttcgggaataagacggccggcttcggaaccacgaccaccagcgctccgtccttc
ggagccggaaccggactgttcgggaacaagccggctctggcgctcggaaccggaaccaac
acgtccaccttcggttttggagcgaatccagcagcagggggtctgttcggtaataagccg
gctactggaggactgggaaccggactgggaaccagcttcggagccgcggtgggaacgggc
cagacgtctctgtttgggaacaaccagaacaaactgggaaccacactgggaacgatggga
acgttcggagcgaccggattcaacagcggagcgagtacgctgggcttcggagcgccgcag
cagcccgtcgctctcaccgatccgaacgcagcggccgctcagcaggcgatgcttcagcag
cagctcagcgttctggcgtattcaccgtacggagactcgccgctgttcagaaacccgctg
tccgaccccaagaagaaggaagagcgtctgaaaccgaccaatccgacggcccagaaggct
ctgaccacgcccactcactacaagctgaccccccgcccagcgacccgggtccgacccaaa
gctctgtcgtcatcgggagcctccaagtctcagctgttcgacggcctggacgacgacgag
ccgtcgctcaccaacggagccttcatacccaggaagagcatcaagaaacttgtgctgaag
aacctgaacagcagtcagtacaacagtccgatcagcaaagagacggacgacctcgcttca
ccgtcagaatatccacagaacggacacagccacatggaggacgaggacgagctgcgagag
cttccgggtccgagcagccgagccgacgacgaccccgaagtcacgcagttctacgtgaat
ccgatcgctaagccgattcctcacggccgcctgcagagcagcctgcaggacaccatcagc
gagctcaacatgcacaaacccgccaggaacggcctggagctgagcagcgatgacgtttct
gcgtctctgggtgaagattctctgctggagagtcgagaggaagagcagcaggagtcccag
tctcctcatcctgcaggcatcgtgctgaaccgggtcggttactatacgatcccgtctatg
gacgagatcgctgagatggtcgatgagaacggagactgtctggtggagaacttctctgtc
gggaggaaaggatacggctccatcttcttccccggcgaggtgaacgtgacgggactgaac
ctcgacgagatcgtccacttcagacgcaaagaggtcatcgtttaccccgacgacaagaac
aagccgccggagggagacgggctgaacaggagggctgaggtgactctggacggcgtctgg
ccgaacgataagacgagctgcactcagatccggagccccgaccgtctgaccgacatgaac
tacgaaggacggctggaaaaagcttcccggaaacaaggagctcgtttcctggagtacaga
actgagaccggatcctgggtgttcgaggtggctcacttctctaaatacgggctgcaggac
tcagacgaggaagacgacgttcctcccaaagctgaccccaagaagctgaagacgatgatg
tcacttcctccctcccagcagcagatggcgccacaggcacagtccaccgtggtcgtggat
cttcccggcagcatggcggagttggacagcgacatggccgacatcacccagagcttcccg
acagagagcatgctgggaggcgaggaggacagcgatctgtcggtcgccttggaaacggca
gcggtggcggcggcgaagctcggcggtttgatctctgcggagaacgacgtcatcgctacg
tccagccacatcgcgtcctcgctgggcatcaaccctcacaccctgcagatcatgaaggcg
tctctgtttgcggaggatgaggaggacagcgacatgttccaggatcagggagcgatgaag
atctctgccgaggtctcgtctcctcgtctcgtcctgccgggagctcagagccgaccgtcg
gtcggcggtctccttcaggctcggtttacttcgggtctcctctctcagctctcagactct
cctcgcgctcctcctctctcgtctccggccgccgtggagtcctcacggtcgttgcactgg
gcgggacccggctcctcctcctcctccttcatgctgccctccagacccgcagaaccggcc
gtcaggaccgttggggtccgacggctgggcggcccggtggccctgaaagagtccgtcact
caggggaagggaggtctgctgatggacgctgggctgtacgtgggccgatcgtttcgggtc
ggttggggtcccggctggacgctggcgcactgcggacagaggctcagctcaacatctaaa
tacatcgaccaagaaatgaacaggaccgacttcagcttcctgccaaaacctgccaagaac
aaaccattggctgagagtccttataaggtcgtgctggagcagctggagggtttggagcct
ccaggagggaagctgagtgaggaagaggatgatgaagatgagagccaggtgttcctgcag
cgccctctagagatctgcctgaagcacagcagcgtcagcaccacagacgcctctgcatgt
ccgctggtccaaccgcagcccggcgttgcagcgctgcacgaatacgcagagtggatcctg
cagctgagcgaccagcagggaggagctgaccccctgctgggttactgggccgaggtctgg
accctgtgtgaggccctctggggccgcttgggaccggcggaccaggagccagatgttgag
ccgtccagcgagtatcagcagcagctggagaggagacgaaccttctccgcctggttgtcc
cgcggcgccacctgcagggtagaggaggaagtggcgctggcggggaaaggccgccacaca
gacgccatcttcagctacctgacaggaaaccgcatcagtgaagcgtgtcggctcgctcag
agggaaggagatcaccgcctgtctctgctgctgtctcaggcgatgggctcccagtacagt
cgggaccttttggcccttcagctcgccgactggaaccgcatgcagtccgacagctacctg
tccgaggagcggctgcgaatcttcacgctgctggccgggaaacccgtgtggcagtcgtct
gagtccgtggtgaacgtctgctcagagctggactggaagcgctgcgtcgccgtgcacctc
tggttcatgttgcctcccaccgcctccgtagccgacgcgctcgccaaatacgaaaccgcc
ttccagggctcgtgtgagggggggaagtacgcctgcgccccgctgcctccgtacctggag
gaggagcagccggaggaagaggaggaggaggaagagtccaaacggcagctgtatgatctc
tgcttccacctgctcaaactctacagcgacagacattataacctgcagcagctgttggac
cctctgacggtgacctgggagcgtctggactaccggctcagttggcacctttggggcgtt
ctgcaggcgctgcactacagccacctgagctcccagcggcaggggctgctgcacgccagc
tacgccgctcagctggagagcgccgggctctggcatctgtccgtcttcatcctgctgcac
atccccgaccacactcagcgggagcgagcggtgcgggagctgctgacgctgcactgcccc
ctgcaggagacgcaggagtcggtccgcaggcagcgcttcctgacggagaggctgctgatc
cccgaacgttggatccacgaagccaaagctaccagagctcgccgtgacggagaccgccac
caggaggcgctgcacctttaccgggccggatactggaaccagtgccaccggctgctcatc
cagcacctggcctcagattgcatcatcaacgataaccacgactacctgctggagtttctg
gaaggtctggcgcttcctgagcacagctcctccatccaggactgggacacggcgggggga
gtttacctggattacatcagagtcatcaagacgctgcaggacatccagcagatggagagc
accggctaccagctggagggtcttcacaccgatgtgacgtctctgtgcagccggatcgag
ctgctgccctgcagcaccgccagagaccgactcgcccaatcagagatggcgaagcgtgtg
gcgaacatccttcgtgtggtcctcagtctgcagcagggcgacgcagcgtccgactctctc
agcatcccgttggctcagctcgctcctcacatcacgcggctgccgatgccggaggattac
acgctggaggagctgcgaggcctcacgcagtcctacctgaggcagctgatcgtcagccaa
tga
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integrated database retrieval system
